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Arabidopsis thaliana UBQ, helicase-c and DEAD-like helicase domain-containing protein (AT5G08110), mRNA

NCBI Reference Sequence: NM_001342981.1

FASTA Graphics 

LOCUS       NM_001342981            3741 bp    mRNA    linear   PLN 20-OCT-2022
DEFINITION  Arabidopsis thaliana UBQ, helicase-c and DEAD-like helicase
            domain-containing protein (AT5G08110), mRNA.
ACCESSION   NM_001342981
VERSION     NM_001342981.1
DBLINK      BioProject: PRJNA116
            BioSample: SAMN03081427
KEYWORDS    RefSeq.
SOURCE      Arabidopsis thaliana (thale cress)
  ORGANISM  Arabidopsis thaliana
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Camelineae; Arabidopsis.
REFERENCE   1  (bases 1 to 3741)
  AUTHORS   Tabata,S., Kaneko,T., Nakamura,Y., Kotani,H., Kato,T., Asamizu,E.,
            Miyajima,N., Sasamoto,S., Kimura,T., Hosouchi,T., Kawashima,K.,
            Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
            Nakazaki,N., Naruo,K., Okumura,S., Shinpo,S., Takeuchi,C., Wada,T.,
            Watanabe,A., Yamada,M., Yasuda,M., Sato,S., de la Bastide,M.,
            Huang,E., Spiegel,L., Gnoj,L., O'Shaughnessy,A., Preston,R.,
            Habermann,K., Murray,J., Johnson,D., Rohlfing,T., Nelson,J.,
            Stoneking,T., Pepin,K., Spieth,J., Sekhon,M., Armstrong,J.,
            Becker,M., Belter,E., Cordum,H., Cordes,M., Courtney,L.,
            Courtney,W., Dante,M., Du,H., Edwards,J., Fryman,J., Haakensen,B.,
            Lamar,E., Latreille,P., Leonard,S., Meyer,R., Mulvaney,E.,
            Ozersky,P., Riley,A., Strowmatt,C., Wagner-McPherson,C., Wollam,A.,
            Yoakum,M., Bell,M., Dedhia,N., Parnell,L., Shah,R., Rodriguez,M.,
            See,L.H., Vil,D., Baker,J., Kirchoff,K., Toth,K., King,L.,
            Bahret,A., Miller,B., Marra,M., Martienssen,R., McCombie,W.R.,
            Wilson,R.K., Murphy,G., Bancroft,I., Volckaert,G., Wambutt,R.,
            Dusterhoft,A., Stiekema,W., Pohl,T., Entian,K.D., Terryn,N.,
            Hartley,N., Bent,E., Johnson,S., Langham,S.A., McCullagh,B.,
            Robben,J., Grymonprez,B., Zimmermann,W., Ramsperger,U., Wedler,H.,
            Balke,K., Wedler,E., Peters,S., van Staveren,M., Dirkse,W.,
            Mooijman,P., Lankhorst,R.K., Weitzenegger,T., Bothe,G., Rose,M.,
            Hauf,J., Berneiser,S., Hempel,S., Feldpausch,M., Lamberth,S.,
            Villarroel,R., Gielen,J., Ardiles,W., Bents,O., Lemcke,K.,
            Kolesov,G., Mayer,K., Rudd,S., Schoof,H., Schueller,C.,
            Zaccaria,P., Mewes,H.W., Bevan,M. and Fransz,P.
  CONSRTM   Kazusa DNA Research Institute; Cold Spring Harbor and Washington
            University in St Louis Sequencing Consortium; European Union
            Arabidopsis Genome Sequencing Consortium
  TITLE     Sequence and analysis of chromosome 5 of the plant Arabidopsis
            thaliana
  JOURNAL   Nature 408 (6814), 823-826 (2000)
   PUBMED   11130714
REFERENCE   2  (bases 1 to 3741)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 3741)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   4  (bases 1 to 3741)
  AUTHORS   Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
  CONSRTM   TAIR
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
            Institution, 260 Panama Street, Stanford, CA, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
            This record is derived from an annotated genomic sequence
            (NC_003076).
FEATURES             Location/Qualifiers
     source          1..3741
                     /organism="Arabidopsis thaliana"
                     /mol_type="mRNA"
                     /db_xref="taxon:3702"
                     /chromosome="5"
                     /ecotype="Columbia"
     gene            1..3741
                     /locus_tag="AT5G08110"
                     /gene_synonym="T22D6.50; T22D6_50"
                     /db_xref="Araport:AT5G08110"
                     /db_xref="GeneID:830705"
                     /db_xref="TAIR:AT5G08110"
     CDS             79..3606
                     /locus_tag="AT5G08110"
                     /gene_synonym="T22D6.50; T22D6_50"
                     /codon_start=1
                     /product="UBQ, helicase-c and DEAD-like helicase
                     domain-containing protein"
                     /protein_id="NP_001330595.1"
                     /db_xref="GeneID:830705"
                     /db_xref="Araport:AT5G08110"
                     /db_xref="TAIR:AT5G08110"
                     /translation="MENERRSGGGDSVPISVRSINGESTTVQVSSDGTIRDLKKALKS
                     CFPPASSSSNFHLYIKGEKLKLDTRVAAITINDGDILGLFPFKKKELRQTPKPDLSKP
                     SSLSSRTSTMKDENAKRAEDHCVGEKRKRDEEACPYGFFNDDLESECKDAFKGQNTEK
                     LAEVLKSRNCLTSPGSTKCLMSWDSSSSLCSCPDWVKLSMETFAFLNIFSYVLQSHGE
                     KLYLTRLKESLSRLAMSGVRVRIQDVKNLSVICPKVVKVITDDYEAVNYENAIVIADY
                     LEMDEKSGRKKIPLAKLFSAMKKREASFKSDFWESIRSLLNKNTGESGIAISLEGLLK
                     FASEGRADGGNEARQAGKGTCPTSGSRKFQTLCHATNSLLPSEMVEHLRNGIGSKGQV
                     VHVEVIKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAGKNVAVATM
                     TSSGKSLCYNVPVFEELCKDTNSCALYLFPTKALAQDQLRALSDLIKGFEASINMGVY
                     DGDTPYKDRTRLRSNARLLITNPDMLHISILRRHKEQFSRILSNLRYIVIDEAHIYKG
                     PFGCHMALILRRLRRLCSHVYGVNPSFIFCTATSANPREHCMELANLSELELVTIDGS
                     PSSEKLFVLWNPSAPPTSKSEKSSKVVSSSEAAADKPSGAAVDTLSGPASEVSHLFAE
                     MVQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESD
                     LFGGKLCGIAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRQKPSLAVYV
                     AFLGPLDQYYMSFPDKLFGSPIECCHIDSQNKHVLMQHLACAALEHPLSLQYDQQHFG
                     SGLSDPLAELRNKGFLSFDPSRDSSSRIWNYIGREKNPARIVSIRAIETVRYRVMEKK
                     SKDVLDEIEESKAFFHVYEGAIYMNQGRNYLVTSLDIKEKVALCELVNVDYYTRTRDY
                     TDIKVTGGDTAYPVKAPKKPTPQTHACRVTTKWFGFLRIRRRNNEVIDDVELSLPSYT
                     YQSQAVWIQVPMSVKLAVETANLPFRAGLHAACHALVNVVPTRVTCNYSDIAPECPNP
                     QEQRYFPARILVYDRHPGGTGISAKICPLFFELLKDARDLLRSCEKCPPETGCPKCAQ
                     TFGCRGYNELLHKKAAIMIMQGVLDAKED"
ORIGIN      
        1 gcccaacaaa gttttaaaac tatatataca ttaaaaagtt ctttctttgt taatggaagg
       61 aaaaagtaaa atccggtaat ggagaacgag agacgcagcg gcggaggaga cagtgttccg
      121 atctctgtcc gaagcattaa cggcgaatcg acgaccgttc aggtttcctc tgacgggaca
      181 attcgtgacc taaagaaagc cctaaaatcc tgtttccctc ccgcttcctc ttcttccaat
      241 ttccatctgt atatcaaggg tgagaaattg aaattggaca ctagagtggc tgcgattact
      301 attaatgacg gtgatatctt gggtttattt ccgtttaaga agaaggaact tcgacagact
      361 ccaaaacctg atttatcaaa accttcctcc ttgagttcaa gaacctcaac tatgaaagat
      421 gaaaacgcta aaagagctga ggatcattgt gttggtgaga aacgaaaacg ggatgaagaa
      481 gcgtgtccat atggattctt taatgatgat ttggagtctg agtgtaaaga tgcattcaag
      541 ggtcagaaca cagagaagct tgctgaggtt ttaaagtcca ggaattgctt gacatctcca
      601 ggttctacaa aatgcttgat gtcatgggat tcaagtagct ctttgtgttc ttgtcctgat
      661 tgggtgaaat tgtctatgga gacattcgcg tttttgaata ttttttcata tgttcttcaa
      721 tcacatggag aaaagttata tttaacccgc ttgaaggaat ctctttcccg gttagctatg
      781 tctggagttc gtgttcgtat acaagacgtt aagaatctct ctgttatatg ccccaaggta
      841 gtaaaggtta tcactgatga ctatgaggct gtgaactatg agaacgctat agttatagct
      901 gactatctgg agatggatga aaaatcaggt cgtaaaaaaa ttcctcttgc aaagctcttt
      961 agtgccatga aaaaacggga ggcttccttt aagtctgatt tctgggagtc catcagatcg
     1021 ctactgaaca aaaatacagg tgagagtgga atagctattt ccttggaggg cttgcttaaa
     1081 tttgccagtg aaggaagagc tgatggtgga aacgaagcta gacaggctgg gaaaggcact
     1141 tgtcctacct ctggttctcg taaattccag actttgtgtc atgccacaaa ttcactgcta
     1201 ccatcggaga tggttgaaca tctcaggaat ggtattggat ctaaaggaca ggtagttcac
     1261 gttgaagtta tcaaggccag aaaatctgcc tacgtcgaaa tgtcagataa gctctcggaa
     1321 accaccaagt ctgccttgaa acgaattggt ctcaacacat tatacagcca tcaggctgaa
     1381 gcaatttcag cagccttggc tggaaagaat gttgcggttg caactatgac ttccagtgga
     1441 aaatctcttt gctataacgt gccagtcttt gaggaattgt gcaaagatac aaattcttgt
     1501 gccttgtact tatttccgac caaggcctta gctcaggatc aattaagagc attgtctgat
     1561 ttgataaaag gattcgaagc aagcataaac atgggtgtat acgatggtga tactccttac
     1621 aaggatagaa caaggctgag gagtaatgct agactgctga tcacaaatcc tgatatgtta
     1681 catatatcaa ttttgcgtcg ccataaagaa caattcagcc ggattttatc taaccttagg
     1741 tacattgtga ttgatgaagc ccatatttac aaaggaccat ttggctgcca catggccctt
     1801 atattgagaa gacttcgccg cctgtgctct catgtatatg gtgtcaatcc ttctttcata
     1861 ttttgcactg caacttctgc taatcctcga gaacattgca tggagcttgc aaacctatct
     1921 gagctcgagc tggtaacaat agatggaagt ccttcctctg aaaagctttt tgtcttgtgg
     1981 aatccatcag ctcctccaac aagtaaatct gaaaaaagtt caaaagtcgt gagtagtagt
     2041 gaagctgctg cagataaacc atctggagct gctgtcgata cactatcagg cccagcttct
     2101 gaagtttcac accttttcgc agagatggtt cagcatggat tacgttgtat tgctttttgt
     2161 ccatctcgca aactctgtga acttgttctg tgtttgacac gtgaaattct agctgagact
     2221 gcccctcatc tggttgaagc cataacctca tatcgtggag gctacattgc tgaggaccgg
     2281 aggaaaatag agagtgattt atttggtgga aagctttgtg gcattgctgc aacaaacgca
     2341 cttgagttgg ggattgatgt tggtcacatc gatgtaactc ttcatttagg ttttcccggg
     2401 agtattgcca gtctttggca gcaagccggt cggtctggaa ggcgacaaaa gccctctctt
     2461 gctgtatatg ttgcctttct cggcccgctt gaccaatact acatgagctt tccggacaaa
     2521 ctctttggta gcccaattga gtgttgccat attgattctc aaaataagca tgtccttatg
     2581 caacatttgg cttgtgctgc tcttgagcat ccgttgagct tacaatatga tcaacagcac
     2641 tttggttctg gcttaagcga ccctcttgct gagctcagga acaaaggatt cttgagtttt
     2701 gatccatccc gtgattcttc ttctagaata tggaactata ttggtcgaga gaaaaatcct
     2761 gcgaggatag tctctatacg ggccatagag acagtaagat acagagtcat ggaaaaaaaa
     2821 agtaaagatg ttctcgatga aatcgaggaa agcaaagcgt ttttccacgt atatgaagga
     2881 gctatttata tgaaccaagg aaggaactac ctggtcacga gtctggatat aaaagaaaag
     2941 gtagctctgt gtgaactagt aaacgtggat tactacacca ggactcggga ttacactgat
     3001 atcaaagtaa ctggtggtga cactgcttac ccggtcaagg ctccaaagaa gccaacacca
     3061 caaactcatg catgtagagt gacaacaaag tggtttggat ttcttcgtat ccgaagaaga
     3121 aacaatgaag taattgatga tgttgagctt tcactcccaa gttacactta ccaatcacag
     3181 gctgtttgga ttcaagtgcc gatgtcggta aaactagcag tggagacggc aaacttgcca
     3241 ttccgtgctg gtttacacgc agcttgtcac gcccttgtca acgttgttcc aacaagagtg
     3301 acatgcaact attcagacat agctccagaa tgtccaaatc cgcaagagca acggtatttc
     3361 ccagcaagaa tcttagtata tgatcgtcat cctggaggaa ctggcatatc cgccaagatc
     3421 tgtccgctct tctttgagct tctaaaagat gctcgtgatc tcttaaggtc ttgcgaaaaa
     3481 tgcccacctg aaactggttg ccccaagtgc gctcagactt ttggttgccg agggtacaat
     3541 gaactcctac ataagaaagc agccatcatg atcatgcagg gcgttttgga cgcgaaggaa
     3601 gattgaatca tcagacatct caagattaca atttttttca ttttttgtaa atctaattca
     3661 ttcaaaaggt taaaatagat ttgattgact gactagttaa caacacattt ttgttactaa
     3721 taaaaatctt gtaattgaca c
//
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