LOCUS NM_001342981 3741 bp mRNA linear PLN 20-OCT-2022
DEFINITION Arabidopsis thaliana UBQ, helicase-c and DEAD-like helicase
domain-containing protein (AT5G08110), mRNA.
ACCESSION NM_001342981
VERSION NM_001342981.1
DBLINK BioProject: PRJNA116
BioSample: SAMN03081427
KEYWORDS RefSeq.
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 3741)
AUTHORS Tabata,S., Kaneko,T., Nakamura,Y., Kotani,H., Kato,T., Asamizu,E.,
Miyajima,N., Sasamoto,S., Kimura,T., Hosouchi,T., Kawashima,K.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Naruo,K., Okumura,S., Shinpo,S., Takeuchi,C., Wada,T.,
Watanabe,A., Yamada,M., Yasuda,M., Sato,S., de la Bastide,M.,
Huang,E., Spiegel,L., Gnoj,L., O'Shaughnessy,A., Preston,R.,
Habermann,K., Murray,J., Johnson,D., Rohlfing,T., Nelson,J.,
Stoneking,T., Pepin,K., Spieth,J., Sekhon,M., Armstrong,J.,
Becker,M., Belter,E., Cordum,H., Cordes,M., Courtney,L.,
Courtney,W., Dante,M., Du,H., Edwards,J., Fryman,J., Haakensen,B.,
Lamar,E., Latreille,P., Leonard,S., Meyer,R., Mulvaney,E.,
Ozersky,P., Riley,A., Strowmatt,C., Wagner-McPherson,C., Wollam,A.,
Yoakum,M., Bell,M., Dedhia,N., Parnell,L., Shah,R., Rodriguez,M.,
See,L.H., Vil,D., Baker,J., Kirchoff,K., Toth,K., King,L.,
Bahret,A., Miller,B., Marra,M., Martienssen,R., McCombie,W.R.,
Wilson,R.K., Murphy,G., Bancroft,I., Volckaert,G., Wambutt,R.,
Dusterhoft,A., Stiekema,W., Pohl,T., Entian,K.D., Terryn,N.,
Hartley,N., Bent,E., Johnson,S., Langham,S.A., McCullagh,B.,
Robben,J., Grymonprez,B., Zimmermann,W., Ramsperger,U., Wedler,H.,
Balke,K., Wedler,E., Peters,S., van Staveren,M., Dirkse,W.,
Mooijman,P., Lankhorst,R.K., Weitzenegger,T., Bothe,G., Rose,M.,
Hauf,J., Berneiser,S., Hempel,S., Feldpausch,M., Lamberth,S.,
Villarroel,R., Gielen,J., Ardiles,W., Bents,O., Lemcke,K.,
Kolesov,G., Mayer,K., Rudd,S., Schoof,H., Schueller,C.,
Zaccaria,P., Mewes,H.W., Bevan,M. and Fransz,P.
CONSRTM Kazusa DNA Research Institute; Cold Spring Harbor and Washington
University in St Louis Sequencing Consortium; European Union
Arabidopsis Genome Sequencing Consortium
TITLE Sequence and analysis of chromosome 5 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 823-826 (2000)
PUBMED 11130714
REFERENCE 2 (bases 1 to 3741)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 3741)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
REFERENCE 4 (bases 1 to 3741)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
This record is derived from an annotated genomic sequence
(NC_003076).
FEATURES Location/Qualifiers
source 1..3741
/organism="Arabidopsis thaliana"
/mol_type="mRNA"
/db_xref="taxon:3702"
/chromosome="5"
/ecotype="Columbia"
gene 1..3741
/locus_tag="AT5G08110"
/gene_synonym="T22D6.50; T22D6_50"
/db_xref="Araport:AT5G08110"
/db_xref="GeneID:830705"
/db_xref="TAIR:AT5G08110"
CDS 79..3606
/locus_tag="AT5G08110"
/gene_synonym="T22D6.50; T22D6_50"
/codon_start=1
/product="UBQ, helicase-c and DEAD-like helicase
domain-containing protein"
/protein_id="NP_001330595.1"
/db_xref="GeneID:830705"
/db_xref="Araport:AT5G08110"
/db_xref="TAIR:AT5G08110"
/translation="MENERRSGGGDSVPISVRSINGESTTVQVSSDGTIRDLKKALKS
CFPPASSSSNFHLYIKGEKLKLDTRVAAITINDGDILGLFPFKKKELRQTPKPDLSKP
SSLSSRTSTMKDENAKRAEDHCVGEKRKRDEEACPYGFFNDDLESECKDAFKGQNTEK
LAEVLKSRNCLTSPGSTKCLMSWDSSSSLCSCPDWVKLSMETFAFLNIFSYVLQSHGE
KLYLTRLKESLSRLAMSGVRVRIQDVKNLSVICPKVVKVITDDYEAVNYENAIVIADY
LEMDEKSGRKKIPLAKLFSAMKKREASFKSDFWESIRSLLNKNTGESGIAISLEGLLK
FASEGRADGGNEARQAGKGTCPTSGSRKFQTLCHATNSLLPSEMVEHLRNGIGSKGQV
VHVEVIKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAGKNVAVATM
TSSGKSLCYNVPVFEELCKDTNSCALYLFPTKALAQDQLRALSDLIKGFEASINMGVY
DGDTPYKDRTRLRSNARLLITNPDMLHISILRRHKEQFSRILSNLRYIVIDEAHIYKG
PFGCHMALILRRLRRLCSHVYGVNPSFIFCTATSANPREHCMELANLSELELVTIDGS
PSSEKLFVLWNPSAPPTSKSEKSSKVVSSSEAAADKPSGAAVDTLSGPASEVSHLFAE
MVQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESD
LFGGKLCGIAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRQKPSLAVYV
AFLGPLDQYYMSFPDKLFGSPIECCHIDSQNKHVLMQHLACAALEHPLSLQYDQQHFG
SGLSDPLAELRNKGFLSFDPSRDSSSRIWNYIGREKNPARIVSIRAIETVRYRVMEKK
SKDVLDEIEESKAFFHVYEGAIYMNQGRNYLVTSLDIKEKVALCELVNVDYYTRTRDY
TDIKVTGGDTAYPVKAPKKPTPQTHACRVTTKWFGFLRIRRRNNEVIDDVELSLPSYT
YQSQAVWIQVPMSVKLAVETANLPFRAGLHAACHALVNVVPTRVTCNYSDIAPECPNP
QEQRYFPARILVYDRHPGGTGISAKICPLFFELLKDARDLLRSCEKCPPETGCPKCAQ
TFGCRGYNELLHKKAAIMIMQGVLDAKED"
ORIGIN
1 gcccaacaaa gttttaaaac tatatataca ttaaaaagtt ctttctttgt taatggaagg
61 aaaaagtaaa atccggtaat ggagaacgag agacgcagcg gcggaggaga cagtgttccg
121 atctctgtcc gaagcattaa cggcgaatcg acgaccgttc aggtttcctc tgacgggaca
181 attcgtgacc taaagaaagc cctaaaatcc tgtttccctc ccgcttcctc ttcttccaat
241 ttccatctgt atatcaaggg tgagaaattg aaattggaca ctagagtggc tgcgattact
301 attaatgacg gtgatatctt gggtttattt ccgtttaaga agaaggaact tcgacagact
361 ccaaaacctg atttatcaaa accttcctcc ttgagttcaa gaacctcaac tatgaaagat
421 gaaaacgcta aaagagctga ggatcattgt gttggtgaga aacgaaaacg ggatgaagaa
481 gcgtgtccat atggattctt taatgatgat ttggagtctg agtgtaaaga tgcattcaag
541 ggtcagaaca cagagaagct tgctgaggtt ttaaagtcca ggaattgctt gacatctcca
601 ggttctacaa aatgcttgat gtcatgggat tcaagtagct ctttgtgttc ttgtcctgat
661 tgggtgaaat tgtctatgga gacattcgcg tttttgaata ttttttcata tgttcttcaa
721 tcacatggag aaaagttata tttaacccgc ttgaaggaat ctctttcccg gttagctatg
781 tctggagttc gtgttcgtat acaagacgtt aagaatctct ctgttatatg ccccaaggta
841 gtaaaggtta tcactgatga ctatgaggct gtgaactatg agaacgctat agttatagct
901 gactatctgg agatggatga aaaatcaggt cgtaaaaaaa ttcctcttgc aaagctcttt
961 agtgccatga aaaaacggga ggcttccttt aagtctgatt tctgggagtc catcagatcg
1021 ctactgaaca aaaatacagg tgagagtgga atagctattt ccttggaggg cttgcttaaa
1081 tttgccagtg aaggaagagc tgatggtgga aacgaagcta gacaggctgg gaaaggcact
1141 tgtcctacct ctggttctcg taaattccag actttgtgtc atgccacaaa ttcactgcta
1201 ccatcggaga tggttgaaca tctcaggaat ggtattggat ctaaaggaca ggtagttcac
1261 gttgaagtta tcaaggccag aaaatctgcc tacgtcgaaa tgtcagataa gctctcggaa
1321 accaccaagt ctgccttgaa acgaattggt ctcaacacat tatacagcca tcaggctgaa
1381 gcaatttcag cagccttggc tggaaagaat gttgcggttg caactatgac ttccagtgga
1441 aaatctcttt gctataacgt gccagtcttt gaggaattgt gcaaagatac aaattcttgt
1501 gccttgtact tatttccgac caaggcctta gctcaggatc aattaagagc attgtctgat
1561 ttgataaaag gattcgaagc aagcataaac atgggtgtat acgatggtga tactccttac
1621 aaggatagaa caaggctgag gagtaatgct agactgctga tcacaaatcc tgatatgtta
1681 catatatcaa ttttgcgtcg ccataaagaa caattcagcc ggattttatc taaccttagg
1741 tacattgtga ttgatgaagc ccatatttac aaaggaccat ttggctgcca catggccctt
1801 atattgagaa gacttcgccg cctgtgctct catgtatatg gtgtcaatcc ttctttcata
1861 ttttgcactg caacttctgc taatcctcga gaacattgca tggagcttgc aaacctatct
1921 gagctcgagc tggtaacaat agatggaagt ccttcctctg aaaagctttt tgtcttgtgg
1981 aatccatcag ctcctccaac aagtaaatct gaaaaaagtt caaaagtcgt gagtagtagt
2041 gaagctgctg cagataaacc atctggagct gctgtcgata cactatcagg cccagcttct
2101 gaagtttcac accttttcgc agagatggtt cagcatggat tacgttgtat tgctttttgt
2161 ccatctcgca aactctgtga acttgttctg tgtttgacac gtgaaattct agctgagact
2221 gcccctcatc tggttgaagc cataacctca tatcgtggag gctacattgc tgaggaccgg
2281 aggaaaatag agagtgattt atttggtgga aagctttgtg gcattgctgc aacaaacgca
2341 cttgagttgg ggattgatgt tggtcacatc gatgtaactc ttcatttagg ttttcccggg
2401 agtattgcca gtctttggca gcaagccggt cggtctggaa ggcgacaaaa gccctctctt
2461 gctgtatatg ttgcctttct cggcccgctt gaccaatact acatgagctt tccggacaaa
2521 ctctttggta gcccaattga gtgttgccat attgattctc aaaataagca tgtccttatg
2581 caacatttgg cttgtgctgc tcttgagcat ccgttgagct tacaatatga tcaacagcac
2641 tttggttctg gcttaagcga ccctcttgct gagctcagga acaaaggatt cttgagtttt
2701 gatccatccc gtgattcttc ttctagaata tggaactata ttggtcgaga gaaaaatcct
2761 gcgaggatag tctctatacg ggccatagag acagtaagat acagagtcat ggaaaaaaaa
2821 agtaaagatg ttctcgatga aatcgaggaa agcaaagcgt ttttccacgt atatgaagga
2881 gctatttata tgaaccaagg aaggaactac ctggtcacga gtctggatat aaaagaaaag
2941 gtagctctgt gtgaactagt aaacgtggat tactacacca ggactcggga ttacactgat
3001 atcaaagtaa ctggtggtga cactgcttac ccggtcaagg ctccaaagaa gccaacacca
3061 caaactcatg catgtagagt gacaacaaag tggtttggat ttcttcgtat ccgaagaaga
3121 aacaatgaag taattgatga tgttgagctt tcactcccaa gttacactta ccaatcacag
3181 gctgtttgga ttcaagtgcc gatgtcggta aaactagcag tggagacggc aaacttgcca
3241 ttccgtgctg gtttacacgc agcttgtcac gcccttgtca acgttgttcc aacaagagtg
3301 acatgcaact attcagacat agctccagaa tgtccaaatc cgcaagagca acggtatttc
3361 ccagcaagaa tcttagtata tgatcgtcat cctggaggaa ctggcatatc cgccaagatc
3421 tgtccgctct tctttgagct tctaaaagat gctcgtgatc tcttaaggtc ttgcgaaaaa
3481 tgcccacctg aaactggttg ccccaagtgc gctcagactt ttggttgccg agggtacaat
3541 gaactcctac ataagaaagc agccatcatg atcatgcagg gcgttttgga cgcgaaggaa
3601 gattgaatca tcagacatct caagattaca atttttttca ttttttgtaa atctaattca
3661 ttcaaaaggt taaaatagat ttgattgact gactagttaa caacacattt ttgttactaa
3721 taaaaatctt gtaattgaca c
//