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    zinc metalloproteinase-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 833542, updated on 18-Sep-2024

    Summary

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    Official Full Name
    zinc metalloproteinase-like protein
    Primary source
    TAIR:AT5G35690
    Locus tag
    AT5G35690
    See related
    Araport:AT5G35690
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MXH1.3; MXH1_3
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    10
    Sequence:
    Chromosome: 5; NC_003076.8 (13864646..13868362, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Glycine-rich protein family Neighboring gene IQ-domain 33 Neighboring gene Nucleic acid-binding, OB-fold-like protein Neighboring gene zinc metalloproteinase-like protein Neighboring gene nuclease HARBI1-like protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_122960.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    zinc metalloproteinase-like protein
    NP_198419.2
    • CONTAINS InterPro DOMAIN/s: WLM (InterPro:IPR013536), PUB domain (InterPro:IPR018997), PUG domain (InterPro:IPR006567); BEST Arabidopsis thaliana protein match is: zinc ion binding (TAIR:AT1G55915.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      13864646..13868362 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_122960.5 → NP_198419.2  zinc metalloproteinase-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_198419.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9Y8B0, Q8VYQ7
      Conserved Domains (2) summary
      cd10463
      Location:497 → 597
      PUB_WLM; PNGase/UBA or UBX (PUB) domain of the Wss1p-like metalloprotease (WLM) family
      pfam08325
      Location:144 → 329
      WLM; WLM domain
    Nucleotide Protein
    Heading Accession and Version

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