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    hypothetical protein (Domain of unknown function DUF220) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838979, updated on 18-Sep-2024

    Summary

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    Official Full Name
    hypothetical protein (Domain of unknown function DUF220)
    Primary source
    TAIR:AT1G23690
    Locus tag
    AT1G23690
    See related
    Araport:AT1G23690
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F5O8.24; F5O8_24
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    5
    Sequence:
    Chromosome: 1; NC_003070.9 (8377262..8378769, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene OBP32pep protein, putative (DUF220) Neighboring gene hypothetical protein (DUF220) Neighboring gene Protein kinase superfamily protein Neighboring gene hypothetical protein (DUF1645)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001084121.3
    NM_001198144.1
    NM_001332613.1
    NM_102217.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    hypothetical protein (Domain of unknown function DUF220)
    NP_001077590.1
    • Domain of unknown function DUF220; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: petal, leaf whorl, sepal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF220 (InterPro:IPR003863); BEST Arabidopsis thaliana protein match is: Domain of unknown function DUF220 (TAIR:AT1G23600.1); Has 139 Blast hits to 124 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 139; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    NP_001185073.1
    • Domain of unknown function DUF220; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: petal, leaf whorl, sepal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF220 (InterPro:IPR003863); BEST Arabidopsis thaliana protein match is: Domain of unknown function DUF220 (TAIR:AT1G23600.1).
    NP_173781.1
    • Domain of unknown function DUF220; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF220 (InterPro:IPR003863); BEST Arabidopsis thaliana protein match is: Domain of unknown function DUF220 (TAIR:AT1G23600.1); Has 139 Blast hits to 124 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 139; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      8377262..8378769 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001084121.3 → NP_001077590.1  hypothetical protein (Domain of unknown function DUF220) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001077590.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654EHL8, Q1PFS8
      Conserved Domains (1) summary
      pfam02713
      Location:149 → 221
      DUF220; Domain of unknown function DUF220

    2. NM_001198144.1 → NP_001185073.1  hypothetical protein (Domain of unknown function DUF220) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001185073.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654EHL8, F4I6A3
      Conserved Domains (1) summary
      pfam02713
      Location:108 → 178
      DUF220; Domain of unknown function DUF220

    3. NM_102217.2 → NP_173781.1  hypothetical protein (Domain of unknown function DUF220) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_173781.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654EHL8, Q9ZUC6
      Conserved Domains (1) summary
      pfam02713
      Location:154 → 226
      DUF220; Domain of unknown function DUF220

    4. NM_001332613.1 → NP_001320769.1  hypothetical protein (Domain of unknown function DUF220) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8ANV1
    Nucleotide Protein
    Heading Accession and Version

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