NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|334182800|ref|NP_001185073|]
View 

hypothetical protein (Domain of unknown function DUF220) [Arabidopsis thaliana]

Protein Classification

DUF220 domain-containing protein( domain architecture ID 10497878)

DUF220 domain-containing protein

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
DUF220 pfam02713
Domain of unknown function DUF220; This is family consists of a region in several Arabidopsis ...
 108-178 5.61e-33

Domain of unknown function DUF220; This is family consists of a region in several Arabidopsis thaliana hypothetical proteins none of which have any known function. The aligned region contains two cysteine residues. This domain shows structural similarity to members of the Bet v1-like superfamily and may be involved in lipid binding.


:

Pssm-ID: 460660  Cd Length: 73  Bit Score: 113.88  E-value: 5.61e-33
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 334182800  108 DFPFFRIDNETGRELLGRYMKEKMKFMKYFEGKWKIEPLYVDSERLCKDRKPKSREEYKRCSGGEGKVASK 178
Cdd:pfam02713   3 TIPIHLIVDENRKDLTAKYKKEKMMFMKVFEGSWKVEPLYVDSERLCKPRKPKSREEYKKCSGGKGRIGSK 73
 
Name Accession Description Interval E-value
DUF220 pfam02713
Domain of unknown function DUF220; This is family consists of a region in several Arabidopsis ...
 108-178 5.61e-33

Domain of unknown function DUF220; This is family consists of a region in several Arabidopsis thaliana hypothetical proteins none of which have any known function. The aligned region contains two cysteine residues. This domain shows structural similarity to members of the Bet v1-like superfamily and may be involved in lipid binding.


Pssm-ID: 460660  Cd Length: 73  Bit Score: 113.88  E-value: 5.61e-33
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 334182800  108 DFPFFRIDNETGRELLGRYMKEKMKFMKYFEGKWKIEPLYVDSERLCKDRKPKSREEYKRCSGGEGKVASK 178
Cdd:pfam02713   3 TIPIHLIVDENRKDLTAKYKKEKMMFMKVFEGSWKVEPLYVDSERLCKPRKPKSREEYKKCSGGKGRIGSK 73
 
Name Accession Description Interval E-value
DUF220 pfam02713
Domain of unknown function DUF220; This is family consists of a region in several Arabidopsis ...
 108-178 5.61e-33

Domain of unknown function DUF220; This is family consists of a region in several Arabidopsis thaliana hypothetical proteins none of which have any known function. The aligned region contains two cysteine residues. This domain shows structural similarity to members of the Bet v1-like superfamily and may be involved in lipid binding.


Pssm-ID: 460660  Cd Length: 73  Bit Score: 113.88  E-value: 5.61e-33
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 334182800  108 DFPFFRIDNETGRELLGRYMKEKMKFMKYFEGKWKIEPLYVDSERLCKDRKPKSREEYKRCSGGEGKVASK 178
Cdd:pfam02713   3 TIPIHLIVDENRKDLTAKYKKEKMMFMKVFEGSWKVEPLYVDSERLCKPRKPKSREEYKKCSGGKGRIGSK 73
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH