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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001039700.3 → NP_001034789.2 polycystin-1-like protein 3 isoform a
See identical proteins and their annotated locations for NP_001034789.2
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) represents the longest variant and encodes the longest isoform (a).
- Source sequence(s)
-
AC125162
- Consensus CDS
-
CCDS40472.1
- UniProtKB/Swiss-Prot
- E9QPA5, Q2EG93, Q2EG94, Q2EG95, Q2EG96, Q2EG97, Q2EG98, Q2EG99, Q7TN87
- Related
- ENSMUSP00000104865.2, ENSMUST00000109242.8
- Conserved Domains (7) summary
-
- cd00037
Location:37 → 142
- CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain
- cd01752
Location:1130 → 1248
- PLAT_polycystin; PLAT/LH2 domain of polycystin-1 like proteins. Polycystins are a large family of membrane proteins composed of multiple domains, present in fish, invertebrates, mammals, and humans that are widely expressed in various cell types and whose biological ...
- pfam01825
Location:1020 → 1058
- GPS; GPCR proteolysis site, GPS, motif
- pfam03546
Location:208 → 666
- Treacle; Treacher Collins syndrome protein Treacle
- pfam08016
Location:1708 → 2118
- PKD_channel; Polycystin cation channel
- pfam15229
Location:345 → 499
- POM121; POM121 family
- pfam15265
Location:413 → 611
- FAM196; FAM196 family
-
NM_001286454.2 → NP_001273383.1 polycystin-1-like protein 3 isoform c
Status: VALIDATED
- Description
- Transcript Variant: This variant (3) uses an alternate in-frame splice site and lacks an alternate in-frame exon in the 5' coding region, compared to variant 1. This results in a shorter protein (isoform c), compared to isoform a.
- Source sequence(s)
-
AC125162
- Consensus CDS
-
CCDS85608.1
- UniProtKB/Swiss-Prot
-
Q2EG98
- UniProtKB/TrEMBL
-
A2A258
- Related
- ENSMUSP00000148592.2, ENSMUST00000212537.2
- Conserved Domains (7) summary
-
- cd00037
Location:37 → 142
- CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain
- cd01752
Location:1120 → 1238
- PLAT_polycystin; PLAT/LH2 domain of polycystin-1 like proteins. Polycystins are a large family of membrane proteins composed of multiple domains, present in fish, invertebrates, mammals, and humans that are widely expressed in various cell types and whose biological ...
- pfam01825
Location:1010 → 1048
- GPS; GPCR proteolysis site, GPS, motif
- pfam03546
Location:208 → 666
- Treacle; Treacher Collins syndrome protein Treacle
- pfam08016
Location:1698 → 2108
- PKD_channel; Polycystin cation channel
- pfam15229
Location:345 → 499
- POM121; POM121 family
- pfam15265
Location:413 → 611
- FAM196; FAM196 family
-
NM_181544.3 → NP_853522.2 polycystin-1-like protein 3 isoform b
See identical proteins and their annotated locations for NP_853522.2
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) has multiple differences in the coding region and its 3' terminal exon extends past a splice site that is used in variant 1. This results in a shorter protein (isoform b) that has a distinct C-terminus, compared to isoform a.
- Source sequence(s)
-
AC125162
- Consensus CDS
-
CCDS22654.1
- UniProtKB/TrEMBL
-
A2A258
- Related
- ENSMUSP00000051512.3, ENSMUST00000057344.3
- Conserved Domains (7) summary
-
- cd00037
Location:37 → 142
- CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain
- cd01752
Location:1120 → 1238
- PLAT_polycystin; PLAT/LH2 domain of polycystin-1 like proteins. Polycystins are a large family of membrane proteins composed of multiple domains, present in fish, invertebrates, mammals, and humans that are widely expressed in various cell types and whose biological ...
- pfam01825
Location:1010 → 1048
- GPS; GPCR proteolysis site, GPS, motif
- pfam03546
Location:208 → 666
- Treacle; Treacher Collins syndrome protein Treacle
- pfam08016
Location:1698 → 2108
- PKD_channel; Polycystin cation channel
- pfam15229
Location:345 → 499
- POM121; POM121 family
- pfam15265
Location:413 → 611
- FAM196; FAM196 family
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCm39 C57BL/6J
Genomic
-
NC_000074.7 Reference GRCm39 C57BL/6J
- Range
-
110340828..110399305
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_017312829.3 → XP_017168318.1 polycystin-1-like protein 3 isoform X8
- Conserved Domains (6) summary
-
- cd00037
Location:37 → 142
- CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain
- PHA03307
Location:147 → 513
- PHA03307; transcriptional regulator ICP4; Provisional
- cd01752
Location:1130 → 1248
- PLAT_polycystin; PLAT/LH2 domain of polycystin-1 like proteins. Polycystins are a large family of membrane proteins composed of multiple domains, present in fish, invertebrates, mammals, and humans that are widely expressed in various cell types and whose biological ...
- pfam05109
Location:351 → 729
- Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
- pfam01825
Location:1020 → 1058
- GPS; GPCR proteolysis site, GPS, motif
- pfam08016
Location:1708 → 2118
- PKD_channel; Polycystin cation channel
-
XM_036154041.1 → XP_036009934.1 polycystin-1-like protein 3 isoform X9
- Conserved Domains (6) summary
-
- cd00037
Location:37 → 142
- CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain
- PHA03307
Location:147 → 513
- PHA03307; transcriptional regulator ICP4; Provisional
- cd01752
Location:1151 → 1269
- PLAT_polycystin; PLAT/LH2 domain of polycystin-1 like proteins. Polycystins are a large family of membrane proteins composed of multiple domains, present in fish, invertebrates, mammals, and humans that are widely expressed in various cell types and whose biological ...
- pfam05109
Location:347 → 705
- Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
- pfam01825
Location:1041 → 1079
- GPS; GPCR proteolysis site, GPS, motif
- pfam08016
Location:1729 → 1909
- PKD_channel; Polycystin cation channel
-
XM_017312825.3 → XP_017168314.1 polycystin-1-like protein 3 isoform X4
- Conserved Domains (6) summary
-
- cd00037
Location:37 → 142
- CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain
- cd01752
Location:1151 → 1269
- PLAT_polycystin; PLAT/LH2 domain of polycystin-1 like proteins. Polycystins are a large family of membrane proteins composed of multiple domains, present in fish, invertebrates, mammals, and humans that are widely expressed in various cell types and whose biological ...
- pfam05109
Location:325 → 652
- Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
- pfam01825
Location:1041 → 1079
- GPS; GPCR proteolysis site, GPS, motif
- pfam03154
Location:137 → 472
- Atrophin-1; Atrophin-1 family
- pfam08016
Location:1728 → 2138
- PKD_channel; Polycystin cation channel
-
XM_017312821.3 → XP_017168310.1 polycystin-1-like protein 3 isoform X1
- Conserved Domains (6) summary
-
- cd00037
Location:37 → 142
- CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain
- cd01752
Location:1151 → 1269
- PLAT_polycystin; PLAT/LH2 domain of polycystin-1 like proteins. Polycystins are a large family of membrane proteins composed of multiple domains, present in fish, invertebrates, mammals, and humans that are widely expressed in various cell types and whose biological ...
- pfam05109
Location:325 → 652
- Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
- pfam01825
Location:1041 → 1079
- GPS; GPCR proteolysis site, GPS, motif
- pfam03154
Location:137 → 472
- Atrophin-1; Atrophin-1 family
- pfam08016
Location:1729 → 2139
- PKD_channel; Polycystin cation channel
-
XM_017312823.3 → XP_017168312.1 polycystin-1-like protein 3 isoform X3
- Conserved Domains (6) summary
-
- cd00037
Location:37 → 142
- CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain
- cd01752
Location:1151 → 1269
- PLAT_polycystin; PLAT/LH2 domain of polycystin-1 like proteins. Polycystins are a large family of membrane proteins composed of multiple domains, present in fish, invertebrates, mammals, and humans that are widely expressed in various cell types and whose biological ...
- pfam05109
Location:325 → 652
- Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
- pfam01825
Location:1041 → 1079
- GPS; GPCR proteolysis site, GPS, motif
- pfam03154
Location:137 → 472
- Atrophin-1; Atrophin-1 family
- pfam08016
Location:1728 → 2138
- PKD_channel; Polycystin cation channel
-
XM_017312832.3 → XP_017168321.1 polycystin-1-like protein 3 isoform X14
- Conserved Domains (6) summary
-
- cd00037
Location:37 → 142
- CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain
- cd01752
Location:1151 → 1269
- PLAT_polycystin; PLAT/LH2 domain of polycystin-1 like proteins. Polycystins are a large family of membrane proteins composed of multiple domains, present in fish, invertebrates, mammals, and humans that are widely expressed in various cell types and whose biological ...
- pfam05109
Location:325 → 652
- Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
- pfam01825
Location:1041 → 1079
- GPS; GPCR proteolysis site, GPS, motif
- pfam03154
Location:137 → 472
- Atrophin-1; Atrophin-1 family
- pfam08016
Location:1728 → 2138
- PKD_channel; Polycystin cation channel
-
XM_017312827.3 → XP_017168316.1 polycystin-1-like protein 3 isoform X6
- Conserved Domains (6) summary
-
- cd00037
Location:37 → 142
- CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain
- cd01752
Location:1151 → 1269
- PLAT_polycystin; PLAT/LH2 domain of polycystin-1 like proteins. Polycystins are a large family of membrane proteins composed of multiple domains, present in fish, invertebrates, mammals, and humans that are widely expressed in various cell types and whose biological ...
- pfam05109
Location:325 → 652
- Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
- pfam01825
Location:1041 → 1079
- GPS; GPCR proteolysis site, GPS, motif
- pfam03154
Location:137 → 472
- Atrophin-1; Atrophin-1 family
- pfam08016
Location:1729 → 2139
- PKD_channel; Polycystin cation channel
-
XM_017312828.3 → XP_017168317.1 polycystin-1-like protein 3 isoform X7
- Conserved Domains (6) summary
-
- cd00037
Location:37 → 142
- CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain
- cd01752
Location:1121 → 1239
- PLAT_polycystin; PLAT/LH2 domain of polycystin-1 like proteins. Polycystins are a large family of membrane proteins composed of multiple domains, present in fish, invertebrates, mammals, and humans that are widely expressed in various cell types and whose biological ...
- pfam05109
Location:325 → 652
- Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
- pfam01825
Location:1011 → 1049
- GPS; GPCR proteolysis site, GPS, motif
- pfam03154
Location:137 → 472
- Atrophin-1; Atrophin-1 family
- pfam08016
Location:1699 → 2109
- PKD_channel; Polycystin cation channel
-
XM_017312826.3 → XP_017168315.1 polycystin-1-like protein 3 isoform X5
- Conserved Domains (6) summary
-
- cd00037
Location:37 → 142
- CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain
- cd01752
Location:1131 → 1249
- PLAT_polycystin; PLAT/LH2 domain of polycystin-1 like proteins. Polycystins are a large family of membrane proteins composed of multiple domains, present in fish, invertebrates, mammals, and humans that are widely expressed in various cell types and whose biological ...
- pfam05109
Location:325 → 652
- Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
- pfam01825
Location:1021 → 1059
- GPS; GPCR proteolysis site, GPS, motif
- pfam03154
Location:137 → 472
- Atrophin-1; Atrophin-1 family
- pfam08016
Location:1709 → 2119
- PKD_channel; Polycystin cation channel
-
XM_017312822.3 → XP_017168311.1 polycystin-1-like protein 3 isoform X2
- Conserved Domains (6) summary
-
- cd00037
Location:37 → 142
- CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain
- PHA03307
Location:147 → 513
- PHA03307; transcriptional regulator ICP4; Provisional
- cd01752
Location:1150 → 1268
- PLAT_polycystin; PLAT/LH2 domain of polycystin-1 like proteins. Polycystins are a large family of membrane proteins composed of multiple domains, present in fish, invertebrates, mammals, and humans that are widely expressed in various cell types and whose biological ...
- pfam05109
Location:351 → 662
- Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
- pfam01825
Location:1040 → 1078
- GPS; GPCR proteolysis site, GPS, motif
- pfam08016
Location:1728 → 2138
- PKD_channel; Polycystin cation channel
-
XM_011248385.4 → XP_011246687.1 polycystin-1-like protein 3 isoform X10
- Conserved Domains (5) summary
-
- cd00037
Location:37 → 142
- CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain
- PRK07764
Location:204 → 410
- PRK07764; DNA polymerase III subunits gamma and tau; Validated
- cd01752
Location:1151 → 1269
- PLAT_polycystin; PLAT/LH2 domain of polycystin-1 like proteins. Polycystins are a large family of membrane proteins composed of multiple domains, present in fish, invertebrates, mammals, and humans that are widely expressed in various cell types and whose biological ...
- pfam05109
Location:325 → 652
- Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
- pfam01825
Location:1041 → 1079
- GPS; GPCR proteolysis site, GPS, motif
-
XM_017312831.3 → XP_017168320.1 polycystin-1-like protein 3 isoform X12
- Conserved Domains (5) summary
-
- cd00037
Location:37 → 142
- CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain
- PRK07764
Location:204 → 410
- PRK07764; DNA polymerase III subunits gamma and tau; Validated
- cd01752
Location:1151 → 1269
- PLAT_polycystin; PLAT/LH2 domain of polycystin-1 like proteins. Polycystins are a large family of membrane proteins composed of multiple domains, present in fish, invertebrates, mammals, and humans that are widely expressed in various cell types and whose biological ...
- pfam05109
Location:325 → 652
- Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
- pfam01825
Location:1041 → 1079
- GPS; GPCR proteolysis site, GPS, motif
-
XM_011248386.4 → XP_011246688.1 polycystin-1-like protein 3 isoform X11
- Conserved Domains (5) summary
-
- cd00037
Location:37 → 142
- CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain
- PRK07764
Location:204 → 410
- PRK07764; DNA polymerase III subunits gamma and tau; Validated
- cd01752
Location:1151 → 1269
- PLAT_polycystin; PLAT/LH2 domain of polycystin-1 like proteins. Polycystins are a large family of membrane proteins composed of multiple domains, present in fish, invertebrates, mammals, and humans that are widely expressed in various cell types and whose biological ...
- pfam05109
Location:325 → 652
- Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
- pfam01825
Location:1041 → 1079
- GPS; GPCR proteolysis site, GPS, motif
-
XM_006531009.5 → XP_006531072.1 polycystin-1-like protein 3 isoform X13
- Conserved Domains (5) summary
-
- cd00037
Location:37 → 142
- CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain
- PRK07764
Location:204 → 410
- PRK07764; DNA polymerase III subunits gamma and tau; Validated
- cd01752
Location:1120 → 1238
- PLAT_polycystin; PLAT/LH2 domain of polycystin-1 like proteins. Polycystins are a large family of membrane proteins composed of multiple domains, present in fish, invertebrates, mammals, and humans that are widely expressed in various cell types and whose biological ...
- pfam05109
Location:325 → 652
- Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
- pfam01825
Location:1010 → 1048
- GPS; GPCR proteolysis site, GPS, motif
RNA
-
XR_003947281.2 RNA Sequence