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    Putative pyridoxal phosphate-dependent enzyme, YBL036C type [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 837744, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Putative pyridoxal phosphate-dependent enzyme, YBL036C type
    Primary source
    TAIR:AT1G11930
    Locus tag
    AT1G11930
    See related
    Araport:AT1G11930
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F12F1.20; F12F1_20
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    7
    Sequence:
    Chromosome: 1; NC_003070.9 (4028595..4030656)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Pectin lyase-like superfamily protein Neighboring gene Stigma-specific Stig1 family protein Neighboring gene Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein Neighboring gene Transcription factor jumonji (jmjC) domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_101065.3
    NM_179318.3

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Putative pyridoxal phosphate-dependent enzyme, YBL036C type
    NP_563897.1
    • Predicted pyridoxal phosphate-dependent enzyme, YBL036C type; CONTAINS InterPro DOMAIN/s: Predicted pyridoxal phosphate-dependent enzyme, YBL036C type (InterPro:IPR011078), Alanine racemase, N-terminal (InterPro:IPR001608); BEST Arabidopsis thaliana protein match is: Predicted pyridoxal phosphate-dependent enzyme, YBL036C type (TAIR:AT4G26860.1); Has 7110 Blast hits to 7110 proteins in 2384 species: Archae - 21; Bacteria - 4266; Metazoa - 130; Fungi - 135; Plants - 56; Viruses - 0; Other Eukaryotes - 2502 (source: NCBI BLink).
    NP_849649.1
    • Predicted pyridoxal phosphate-dependent enzyme, YBL036C type; CONTAINS InterPro DOMAIN/s: Predicted pyridoxal phosphate-dependent enzyme, YBL036C type (InterPro:IPR011078), Alanine racemase, N-terminal (InterPro:IPR001608); BEST Arabidopsis thaliana protein match is: Predicted pyridoxal phosphate-dependent enzyme, YBL036C type (TAIR:AT4G26860.1); Has 7155 Blast hits to 7155 proteins in 2359 species: Archae - 21; Bacteria - 4226; Metazoa - 130; Fungi - 135; Plants - 56; Viruses - 0; Other Eukaryotes - 2587 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      4028595..4030656
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_179318.3 → NP_849649.1  Putative pyridoxal phosphate-dependent enzyme, YBL036C type [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_849649.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W250, O65386
      Conserved Domains (1) summary
      cd06822
      Location:27 → 248
      PLPDE_III_YBL036c_euk; Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Eukaryotic YBL036c-like proteins

    2. NM_101065.3 → NP_563897.1  Putative pyridoxal phosphate-dependent enzyme, YBL036C type [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_563897.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q944L8
      Conserved Domains (1) summary
      cd06822
      Location:27 → 250
      PLPDE_III_YBL036c_euk; Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Eukaryotic YBL036c-like proteins
    Nucleotide Protein
    Heading Accession and Version

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