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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_008648.1 RefSeqGene
- Range
-
5001..98545
- Download
- GenBank, FASTA, Sequence Viewer (Graphics), LRG_221
mRNA and Protein(s)
-
NM_000534.5 → NP_000525.1 PMS1 protein homolog 1 isoform a
See identical proteins and their annotated locations for NP_000525.1
Status: REVIEWED
- Source sequence(s)
-
BC096330, BC096332, BM677668, DC347859
- Consensus CDS
-
CCDS2302.1
- UniProtKB/Swiss-Prot
- D3DPI1, P54277, Q4VAL4, Q5FBZ3, Q5FBZ6, Q5FBZ8
- UniProtKB/TrEMBL
-
B4DIH7
- Related
- ENSP00000406490.3, ENST00000441310.7
- Conserved Domains (2) summary
-
- cd01390
Location:572 → 636
- HMGB-UBF_HMG-box; HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone ...
- TIGR00585
Location:1 → 318
- mutl; DNA mismatch repair protein MutL
-
NM_001128143.2 → NP_001121615.1 PMS1 protein homolog 1 isoform b
See identical proteins and their annotated locations for NP_001121615.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) is also known as PMS1 nirs variant 7.
- Source sequence(s)
-
AB102875, BM677668, DC347859
- Consensus CDS
-
CCDS46474.1
- UniProtKB/TrEMBL
-
B4DIH7
- Related
- ENSP00000387125.3, ENST00000409823.7
- Conserved Domains (2) summary
-
- cd01390
Location:533 → 597
- HMGB-UBF_HMG-box; HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone ...
- TIGR00585
Location:1 → 279
- mutl; DNA mismatch repair protein MutL
-
NM_001128144.2 → NP_001121616.1 PMS1 protein homolog 1 isoform c
See identical proteins and their annotated locations for NP_001121616.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) is also known as PMS1 nirs variant 2.
- Source sequence(s)
-
AB102870, BC096330, BM677668, DC347859
- Consensus CDS
-
CCDS46473.1
- UniProtKB/TrEMBL
-
I6L9H5
- Related
- ENSP00000401064.2, ENST00000447232.6
- Conserved Domains (4) summary
-
- cd01390
Location:572 → 617
- HMGB-UBF_HMG-box; HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone ...
- cd03485
Location:205 → 338
- MutL_Trans_hPMS_1_like; MutL_Trans_hPMS1_like: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to human PSM1 (hPSM1) and yeast MLH2. hPSM1 and yMLH2 are members of the DNA mismatch repair (MutL/MLH1/PMS2) family. This transducer domain is ...
- TIGR00585
Location:1 → 318
- mutl; DNA mismatch repair protein MutL
- pfam02518
Location:18 → 105
- HATPase_c; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
-
NM_001289408.2 → NP_001276337.1 PMS1 protein homolog 1 isoform d
See identical proteins and their annotated locations for NP_001276337.1
Status: REVIEWED
- Source sequence(s)
-
AK295602, BC096332, BG195153, DC347859
- Consensus CDS
-
CCDS74615.1
- UniProtKB/TrEMBL
- B4DIH7, B7ZAA0
- Related
- ENSP00000485312.1, ENST00000624204.3
- Conserved Domains (2) summary
-
- cd01390
Location:396 → 460
- HMGB-UBF_HMG-box; HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone ...
- cd03485
Location:29 → 162
- MutL_Trans_hPMS_1_like; MutL_Trans_hPMS1_like: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to human PSM1 (hPSM1) and yeast MLH2. hPSM1 and yMLH2 are members of the DNA mismatch repair (MutL/MLH1/PMS2) family. This transducer domain is ...
-
NM_001289409.2 → NP_001276338.1 PMS1 protein homolog 1 isoform d
See identical proteins and their annotated locations for NP_001276338.1
Status: REVIEWED
- Source sequence(s)
-
AK316215, BC096331, BG214666, DC347859
- Consensus CDS
-
CCDS74615.1
- UniProtKB/TrEMBL
- B4DIH7, B7ZAA0
- Related
- ENSP00000398378.3, ENST00000432292.7
- Conserved Domains (2) summary
-
- cd01390
Location:396 → 460
- HMGB-UBF_HMG-box; HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone ...
- cd03485
Location:29 → 162
- MutL_Trans_hPMS_1_like; MutL_Trans_hPMS1_like: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to human PSM1 (hPSM1) and yeast MLH2. hPSM1 and yMLH2 are members of the DNA mismatch repair (MutL/MLH1/PMS2) family. This transducer domain is ...
-
NM_001321044.2 → NP_001307973.1 PMS1 protein homolog 1 isoform f
Status: REVIEWED
- Source sequence(s)
-
AK316215, AY540751, BM677668, DA389799, DC347859
- UniProtKB/TrEMBL
-
I6L9H5
- Conserved Domains (4) summary
-
- cd01390
Location:533 → 601
- HMGB-UBF_HMG-box; HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone ...
- cd03485
Location:194 → 299
- MutL_Trans_hPMS_1_like; MutL_Trans_hPMS1_like: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to human PSM1 (hPSM1) and yeast MLH2. hPSM1 and yMLH2 are members of the DNA mismatch repair (MutL/MLH1/PMS2) family. This transducer domain is ...
- TIGR00585
Location:1 → 279
- mutl; DNA mismatch repair protein MutL
- pfam02518
Location:18 → 105
- HATPase_c; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
-
NM_001321045.2 → NP_001307974.1 PMS1 protein homolog 1 isoform a
Status: REVIEWED
- Source sequence(s)
-
AK316215, BC096332, BM677668, DB178424, DC347859
- Consensus CDS
-
CCDS2302.1
- UniProtKB/Swiss-Prot
- D3DPI1, P54277, Q4VAL4, Q5FBZ3, Q5FBZ6, Q5FBZ8
- UniProtKB/TrEMBL
-
B4DIH7
- Conserved Domains (2) summary
-
- cd01390
Location:572 → 636
- HMGB-UBF_HMG-box; HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone ...
- TIGR00585
Location:1 → 318
- mutl; DNA mismatch repair protein MutL
-
NM_001321046.2 → NP_001307975.1 PMS1 protein homolog 1 isoform e
Status: REVIEWED
- Source sequence(s)
-
AK316215, BC096332, BM677668, DC347859, DC360786
- UniProtKB/TrEMBL
-
B4DIH7
- Conserved Domains (3) summary
-
- cd01390
Location:511 → 575
- HMGB-UBF_HMG-box; HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone ...
- cd03485
Location:144 → 277
- MutL_Trans_hPMS_1_like; MutL_Trans_hPMS1_like: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to human PSM1 (hPSM1) and yeast MLH2. hPSM1 and yMLH2 are members of the DNA mismatch repair (MutL/MLH1/PMS2) family. This transducer domain is ...
- TIGR00585
Location:1 → 257
- mutl; DNA mismatch repair protein MutL
-
NM_001321047.2 → NP_001307976.1 PMS1 protein homolog 1 isoform a
Status: REVIEWED
- Source sequence(s)
-
AC013468, AK316215, BC096332, BG772717, BM677668, DC347859
- Consensus CDS
-
CCDS2302.1
- UniProtKB/Swiss-Prot
- D3DPI1, P54277, Q4VAL4, Q5FBZ3, Q5FBZ6, Q5FBZ8
- UniProtKB/TrEMBL
-
B4DIH7
- Conserved Domains (2) summary
-
- cd01390
Location:572 → 636
- HMGB-UBF_HMG-box; HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone ...
- TIGR00585
Location:1 → 318
- mutl; DNA mismatch repair protein MutL
-
NM_001321048.2 → NP_001307977.1 PMS1 protein homolog 1 isoform a
Status: REVIEWED
- Source sequence(s)
-
AK316215, BC096332, BM677668, DA206770, DC347859
- Consensus CDS
-
CCDS2302.1
- UniProtKB/Swiss-Prot
- D3DPI1, P54277, Q4VAL4, Q5FBZ3, Q5FBZ6, Q5FBZ8
- UniProtKB/TrEMBL
-
B4DIH7
- Conserved Domains (2) summary
-
- cd01390
Location:572 → 636
- HMGB-UBF_HMG-box; HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone ...
- TIGR00585
Location:1 → 318
- mutl; DNA mismatch repair protein MutL
-
NM_001321049.2 → NP_001307978.1 PMS1 protein homolog 1 isoform g
Status: REVIEWED
- Source sequence(s)
-
AC008122, BC008410, DC347859
- Consensus CDS
-
CCDS82544.1
- UniProtKB/TrEMBL
- E9PC40, Q7KZT4
- Related
- ENSP00000386623.1, ENST00000409985.5
- Conserved Domains (1) summary
-
- cl00075
Location:20 → 61
- HATPase_c; Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins
-
NM_001321051.2 → NP_001307980.1 PMS1 protein homolog 1 isoform h
Status: REVIEWED
- Source sequence(s)
-
BC084548, DC347859
- Consensus CDS
-
CCDS82543.1
- UniProtKB/TrEMBL
- Q5XG96, Q7KZT4
- Related
- ENSP00000363959.4, ENST00000374826.8
- Conserved Domains (2) summary
-
- pfam13900
Location:144 → 165
- GVQW; Putative domain of unknown function
- cl00075
Location:20 → 61
- HATPase_c; Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins
RNA
-
NR_110332.2 RNA Sequence
Status: REVIEWED
- Description
- Transcript Variant: This variant (6) is represented as non-coding because the use of the 5'-most supported translational start codon, as used in variant 1, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
- Source sequence(s)
-
AC008122, AY540751, CV570894
- Related
-
ENST00000450931.5
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000002.12 Reference GRCh38.p14 Primary Assembly
- Range
-
189784450..189877629
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_017004348.2 → XP_016859837.1 PMS1 protein homolog 1 isoform X4
- UniProtKB/TrEMBL
-
I6L9H5
- Conserved Domains (4) summary
-
- cd01390
Location:572 → 617
- HMGB-UBF_HMG-box; HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone ...
- cd03485
Location:205 → 338
- MutL_Trans_hPMS_1_like; MutL_Trans_hPMS1_like: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to human PSM1 (hPSM1) and yeast MLH2. hPSM1 and yMLH2 are members of the DNA mismatch repair (MutL/MLH1/PMS2) family. This transducer domain is ...
- TIGR00585
Location:1 → 318
- mutl; DNA mismatch repair protein MutL
- pfam02518
Location:18 → 105
- HATPase_c; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
-
XM_047444775.1 → XP_047300731.1 PMS1 protein homolog 1 isoform X1
- UniProtKB/TrEMBL
-
B4DIH7
-
XM_024452966.2 → XP_024308734.1 PMS1 protein homolog 1 isoform X1
- UniProtKB/TrEMBL
-
B4DIH7
- Conserved Domains (2) summary
-
- cd01390
Location:533 → 597
- HMGB-UBF_HMG-box; HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone ...
- TIGR00585
Location:1 → 279
- mutl; DNA mismatch repair protein MutL
-
XM_017004344.2 → XP_016859833.1 PMS1 protein homolog 1 isoform X1
- UniProtKB/TrEMBL
-
B4DIH7
- Conserved Domains (2) summary
-
- cd01390
Location:533 → 597
- HMGB-UBF_HMG-box; HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone ...
- TIGR00585
Location:1 → 279
- mutl; DNA mismatch repair protein MutL
-
XM_017004350.2 → XP_016859839.1 PMS1 protein homolog 1 isoform X6
- UniProtKB/TrEMBL
-
I6L9H5
-
XM_017004347.2 → XP_016859836.1 PMS1 protein homolog 1 isoform X2
- UniProtKB/TrEMBL
-
B4DIH7
-
XM_047444777.1 → XP_047300733.1 PMS1 protein homolog 1 isoform X4
- UniProtKB/TrEMBL
-
I6L9H5
-
XM_024452967.2 → XP_024308735.1 PMS1 protein homolog 1 isoform X1
- UniProtKB/TrEMBL
-
B4DIH7
- Conserved Domains (2) summary
-
- cd01390
Location:533 → 597
- HMGB-UBF_HMG-box; HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone ...
- TIGR00585
Location:1 → 279
- mutl; DNA mismatch repair protein MutL
-
XM_047444778.1 → XP_047300734.1 PMS1 protein homolog 1 isoform X6
- UniProtKB/TrEMBL
-
I6L9H5
-
XM_047444776.1 → XP_047300732.1 PMS1 protein homolog 1 isoform X3
- UniProtKB/TrEMBL
-
E9PC65
- Related
- ENSP00000389938.1, ENST00000424307.5
-
XM_006712596.2 → XP_006712659.1 PMS1 protein homolog 1 isoform X5
- UniProtKB/TrEMBL
-
B4DIH7
- Conserved Domains (2) summary
-
- cd01390
Location:387 → 451
- HMGB-UBF_HMG-box; HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone ...
- cd03485
Location:20 → 153
- MutL_Trans_hPMS_1_like; MutL_Trans_hPMS1_like: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to human PSM1 (hPSM1) and yeast MLH2. hPSM1 and yMLH2 are members of the DNA mismatch repair (MutL/MLH1/PMS2) family. This transducer domain is ...
Alternate T2T-CHM13v2.0
Genomic
-
NC_060926.1 Alternate T2T-CHM13v2.0
- Range
-
190273733..190366996
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054342584.1 → XP_054198559.1 PMS1 protein homolog 1 isoform X4
- UniProtKB/TrEMBL
-
I6L9H5
-
XM_054342578.1 → XP_054198553.1 PMS1 protein homolog 1 isoform X1
- UniProtKB/TrEMBL
-
B4DIH7
-
XM_054342579.1 → XP_054198554.1 PMS1 protein homolog 1 isoform X1
- UniProtKB/TrEMBL
-
B4DIH7
-
XM_054342586.1 → XP_054198561.1 PMS1 protein homolog 1 isoform X6
- UniProtKB/TrEMBL
-
I6L9H5
-
XM_054342581.1 → XP_054198556.1 PMS1 protein homolog 1 isoform X2
- UniProtKB/TrEMBL
-
B4DIH7
-
XM_054342583.1 → XP_054198558.1 PMS1 protein homolog 1 isoform X4
- UniProtKB/TrEMBL
-
I6L9H5
-
XM_054342580.1 → XP_054198555.1 PMS1 protein homolog 1 isoform X1
- UniProtKB/TrEMBL
-
B4DIH7
-
XM_054342587.1 → XP_054198562.1 PMS1 protein homolog 1 isoform X6
- UniProtKB/TrEMBL
-
I6L9H5
-
XM_054342582.1 → XP_054198557.1 PMS1 protein homolog 1 isoform X3
- UniProtKB/TrEMBL
-
E9PC65
-
XM_054342577.1 → XP_054198552.1 PMS1 protein homolog 1 isoform X1
- UniProtKB/TrEMBL
-
B4DIH7
-
XM_054342585.1 → XP_054198560.1 PMS1 protein homolog 1 isoform X5
- UniProtKB/TrEMBL
-
B4DIH7