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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_032920.1 RefSeqGene
- Range
-
5214..46075
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
NM_001146705.2 → NP_001140177.1 lysine-specific demethylase 5D isoform 1
See identical proteins and their annotated locations for NP_001140177.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (1).
- Source sequence(s)
-
AA864889, AC010889, BC144102, BC146767
- Consensus CDS
-
CCDS55555.1
- UniProtKB/TrEMBL
-
E9PFH2
- Related
- ENSP00000444293.1, ENST00000541639.5
- Conserved Domains (7) summary
-
- smart00501
Location:80 → 170
- BRIGHT; BRIGHT, ARID (A/T-rich interaction domain) domain
- smart00545
Location:13 → 54
- JmjN; Small domain found in the jumonji family of transcription factors
- pfam02373
Location:522 → 638
- JmjC; JmjC domain, hydroxylase
- cd15604
Location:316 → 361
- PHD1_KDM5C_5D; PHD finger 1 found in Lysine-specific demethylase 5C (KDM5C) and 5D (KDM5D)
- cd15608
Location:1205 → 1265
- PHD2_KDM5C_5D; PHD finger 2 found in Lysine-specific demethylase 5C (KDM5C) and 5D (KDM5D)
- pfam02928
Location:728 → 780
- zf-C5HC2; C5HC2 zinc finger
- pfam08429
Location:793 → 1116
- PLU-1; PLU-1-like protein
-
NM_001146706.2 → NP_001140178.1 lysine-specific demethylase 5D isoform 3
See identical proteins and their annotated locations for NP_001140178.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) lacks two alternate exons in the coding region, compared to variant 1. This results in a shorter protein (isoform 3), compared to isoform 1.
- Source sequence(s)
-
AA864889, AC010889, BC132721, BC146767
- Consensus CDS
-
CCDS55554.1
- UniProtKB/TrEMBL
-
E9PFH2
- Related
- ENSP00000372256.2, ENST00000382806.6
- Conserved Domains (7) summary
-
- smart00545
Location:13 → 54
- JmjN; Small domain found in the jumonji family of transcription factors
- pfam02373
Location:434 → 550
- JmjC; JmjC domain, hydroxylase
- cd15604
Location:259 → 304
- PHD1_KDM5C_5D; PHD finger 1 found in Lysine-specific demethylase 5C (KDM5C) and 5D (KDM5D)
- cd15608
Location:1117 → 1177
- PHD2_KDM5C_5D; PHD finger 2 found in Lysine-specific demethylase 5C (KDM5C) and 5D (KDM5D)
- pfam02928
Location:640 → 692
- zf-C5HC2; C5HC2 zinc finger
- pfam08429
Location:705 → 1028
- PLU-1; PLU-1-like protein
- cl02633
Location:80 → 117
- ARID; ARID/BRIGHT DNA binding domain
-
NM_004653.5 → NP_004644.2 lysine-specific demethylase 5D isoform 2
See identical proteins and their annotated locations for NP_004644.2
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) lacks an alternate exon in the coding region, compared to variant 1. This results in a shorter protein (isoform 2), compared to isoform 1.
- Source sequence(s)
-
AA864889, AC010889, BC132721, BC146767, U52191
- Consensus CDS
-
CCDS14794.1
- UniProtKB/Swiss-Prot
- A2RU19, A6H8V7, B7ZLX1, Q92509, Q92809, Q9BY66, Q9HCU1
- UniProtKB/TrEMBL
- A0A384MR42, E9PFH2
- Related
- ENSP00000322408.4, ENST00000317961.9
- Conserved Domains (7) summary
-
- smart00501
Location:80 → 170
- BRIGHT; BRIGHT, ARID (A/T-rich interaction domain) domain
- smart00545
Location:13 → 54
- JmjN; Small domain found in the jumonji family of transcription factors
- pfam02373
Location:491 → 607
- JmjC; JmjC domain, hydroxylase
- cd15604
Location:316 → 361
- PHD1_KDM5C_5D; PHD finger 1 found in Lysine-specific demethylase 5C (KDM5C) and 5D (KDM5D)
- cd15608
Location:1174 → 1234
- PHD2_KDM5C_5D; PHD finger 2 found in Lysine-specific demethylase 5C (KDM5C) and 5D (KDM5D)
- pfam02928
Location:697 → 749
- zf-C5HC2; C5HC2 zinc finger
- pfam08429
Location:762 → 1085
- PLU-1; PLU-1-like protein
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000024.10 Reference GRCh38.p14 Primary Assembly
- Range
-
19703865..19744726 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_047442766.1 → XP_047298722.1 lysine-specific demethylase 5D isoform X7
- UniProtKB/TrEMBL
-
E9PFH2
-
XM_047442765.1 → XP_047298721.1 lysine-specific demethylase 5D isoform X6
- UniProtKB/TrEMBL
-
E9PFH2
-
XM_047442763.1 → XP_047298719.1 lysine-specific demethylase 5D isoform X3
- UniProtKB/TrEMBL
-
E9PFH2
-
XM_005262560.4 → XP_005262617.1 lysine-specific demethylase 5D isoform X2
- UniProtKB/TrEMBL
-
E9PFH2
- Conserved Domains (7) summary
-
- smart00501
Location:80 → 170
- BRIGHT; BRIGHT, ARID (A/T-rich interaction domain) domain
- smart00545
Location:13 → 54
- JmjN; Small domain found in the jumonji family of transcription factors
- pfam02373
Location:446 → 562
- JmjC; JmjC domain, hydroxylase
- cd15604
Location:271 → 316
- PHD1_KDM5C_5D; PHD finger 1 found in Lysine-specific demethylase 5C (KDM5C) and 5D (KDM5D)
- cd15608
Location:1129 → 1189
- PHD2_KDM5C_5D; PHD finger 2 found in Lysine-specific demethylase 5C (KDM5C) and 5D (KDM5D)
- pfam02928
Location:652 → 704
- zf-C5HC2; C5HC2 zinc finger
- pfam08429
Location:717 → 1040
- PLU-1; PLU-1-like protein
-
XM_047442764.1 → XP_047298720.1 lysine-specific demethylase 5D isoform X5
- UniProtKB/TrEMBL
-
E9PFH2
-
XM_005262561.4 → XP_005262618.1 lysine-specific demethylase 5D isoform X4
- UniProtKB/TrEMBL
-
E9PFH2
- Conserved Domains (7) summary
-
- smart00501
Location:80 → 170
- BRIGHT; BRIGHT, ARID (A/T-rich interaction domain) domain
- smart00545
Location:13 → 54
- JmjN; Small domain found in the jumonji family of transcription factors
- pfam02373
Location:491 → 607
- JmjC; JmjC domain, hydroxylase
- cd15604
Location:316 → 361
- PHD1_KDM5C_5D; PHD finger 1 found in Lysine-specific demethylase 5C (KDM5C) and 5D (KDM5D)
- cd15608
Location:1097 → 1157
- PHD2_KDM5C_5D; PHD finger 2 found in Lysine-specific demethylase 5C (KDM5C) and 5D (KDM5D)
- pfam02928
Location:697 → 749
- zf-C5HC2; C5HC2 zinc finger
- pfam08429
Location:762 → 1008
- PLU-1; PLU-1-like protein
-
XM_011531468.4 → XP_011529770.1 lysine-specific demethylase 5D isoform X1
- UniProtKB/TrEMBL
-
E9PFH2
- Conserved Domains (7) summary
-
- smart00501
Location:80 → 170
- BRIGHT; BRIGHT, ARID (A/T-rich interaction domain) domain
- smart00545
Location:13 → 54
- JmjN; Small domain found in the jumonji family of transcription factors
- pfam02373
Location:491 → 607
- JmjC; JmjC domain, hydroxylase
- cd15604
Location:316 → 361
- PHD1_KDM5C_5D; PHD finger 1 found in Lysine-specific demethylase 5C (KDM5C) and 5D (KDM5D)
- cd15608
Location:1148 → 1208
- PHD2_KDM5C_5D; PHD finger 2 found in Lysine-specific demethylase 5C (KDM5C) and 5D (KDM5D)
- pfam02928
Location:697 → 749
- zf-C5HC2; C5HC2 zinc finger
- pfam08429
Location:762 → 1083
- PLU-1; PLU-1-like protein
-
XM_047442767.1 → XP_047298723.1 lysine-specific demethylase 5D isoform X8
- UniProtKB/TrEMBL
-
E9PFH2
- Related
- ENSP00000398543.1, ENST00000440077.5
-
XM_047442768.1 → XP_047298724.1 lysine-specific demethylase 5D isoform X9
- UniProtKB/TrEMBL
-
B4E1Y0
-
XM_047442769.1 → XP_047298725.1 lysine-specific demethylase 5D isoform X10
-
XM_047442770.1 → XP_047298726.1 lysine-specific demethylase 5D isoform X11
Alternate T2T-CHM13v2.0
Genomic
-
NC_060948.1 Alternate T2T-CHM13v2.0
- Range
-
20610415..20651276 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054328372.1 → XP_054184347.1 lysine-specific demethylase 5D isoform X7
- UniProtKB/TrEMBL
-
E9PFH2
-
XM_054328371.1 → XP_054184346.1 lysine-specific demethylase 5D isoform X6
- UniProtKB/TrEMBL
-
E9PFH2
-
XM_054328368.1 → XP_054184343.1 lysine-specific demethylase 5D isoform X3
- UniProtKB/TrEMBL
-
E9PFH2
-
XM_054328367.1 → XP_054184342.1 lysine-specific demethylase 5D isoform X2
- UniProtKB/TrEMBL
-
E9PFH2
-
XM_054328370.1 → XP_054184345.1 lysine-specific demethylase 5D isoform X5
- UniProtKB/TrEMBL
-
E9PFH2
-
XM_054328369.1 → XP_054184344.1 lysine-specific demethylase 5D isoform X4
- UniProtKB/TrEMBL
-
E9PFH2
-
XM_054328366.1 → XP_054184341.1 lysine-specific demethylase 5D isoform X1
- UniProtKB/TrEMBL
-
E9PFH2
-
XM_054328373.1 → XP_054184348.1 lysine-specific demethylase 5D isoform X8
- UniProtKB/TrEMBL
-
E9PFH2
-
XM_054328374.1 → XP_054184349.1 lysine-specific demethylase 5D isoform X9
- UniProtKB/TrEMBL
-
B4E1Y0
-
XM_054328375.1 → XP_054184350.1 lysine-specific demethylase 5D isoform X10
-
XM_054328376.1 → XP_054184351.1 lysine-specific demethylase 5D isoform X11