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    HIT zinc finger and PAPA-1-like domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 819348, updated on 18-Sep-2024

    Summary

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    Official Full Name
    HIT zinc finger and PAPA-1-like domain-containing protein
    Primary source
    TAIR:AT2G47350
    Locus tag
    AT2G47350
    See related
    Araport:AT2G47350
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T8I13.19
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    7
    Sequence:
    Chromosome: 2; NC_003071.7 (19433725..19437544)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein Neighboring gene P-loop containing nucleoside triphosphate hydrolases superfamily protein Neighboring gene Plant invertase/pectin methylesterase inhibitor superfamily protein Neighboring gene uncharacterized protein Neighboring gene Calcium-dependent phosphotriesterase superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_130303.3
    NM_201978.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in chromatin remodeling IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of Ino80 complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    HIT zinc finger and PAPA-1-like domain-containing protein
    NP_182257.1
    • HIT zinc finger; PAPA-1-like conserved region; CONTAINS InterPro DOMAIN/s: Zinc finger, HIT-type (InterPro:IPR007529), PAPA-1-like conserved region (InterPro:IPR006880); BEST Arabidopsis thaliana protein match is: PAPA-1-like family protein / zinc finger (HIT type) family protein (TAIR:AT3G06660.1); Has 3160 Blast hits to 2461 proteins in 330 species: Archae - 7; Bacteria - 184; Metazoa - 1235; Fungi - 390; Plants - 202; Viruses - 26; Other Eukaryotes - 1116 (source: NCBI BLink).
    NP_973707.1
    • HIT zinc finger; PAPA-1-like conserved region; CONTAINS InterPro DOMAIN/s: PAPA-1-like conserved region (InterPro:IPR006880); BEST Arabidopsis thaliana protein match is: PAPA-1-like family protein / zinc finger (HIT type) family protein (TAIR:AT3G06660.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      19433725..19437544
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_130303.3 → NP_182257.1  HIT zinc finger and PAPA-1-like domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_182257.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VT04, A0A654FD91, O22909
      Conserved Domains (2) summary
      pfam04438
      Location:445 → 476
      zf-HIT; HIT zinc finger
      pfam04795
      Location:345 → 427
      PAPA-1; PAPA-1-like conserved region

    2. NM_201978.1 → NP_973707.1  HIT zinc finger and PAPA-1-like domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_973707.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4IL37
      Conserved Domains (1) summary
      pfam04795
      Location:345 → 369
      PAPA-1; PAPA-1-like conserved region
    Nucleotide Protein
    Heading Accession and Version

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