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Conserved domains on  [gi|42571267|ref|NP_973707|]
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HIT zinc finger and PAPA-1-like domain-containing protein [Arabidopsis thaliana]

Protein Classification

PAPA-1-like domain-containing protein( domain architecture ID 10869)

PAPA-1-like domain-containing protein similar to Saccharomyces cerevisiae ino eighty subunit 2 (IES2) that is a component of the INO80 complex which remodels chromatin by shifting nucleosomes and is involved in DNA repair

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PAPA-1 super family cl04756
PAPA-1-like conserved region; Family of proteins with a conserved region found in PAPA-1, a ...
 345-369 1.45e-05

PAPA-1-like conserved region; Family of proteins with a conserved region found in PAPA-1, a PAP-1 binding protein.


The actual alignment was detected with superfamily member pfam04795:

Pssm-ID: 461431 [Multi-domain]  Cd Length: 78  Bit Score: 42.55  E-value: 1.45e-05
                          10        20
                  ....*....|....*....|....*
gi 42571267   345 EQQLKKAEAAQRRKVQIEKAARESE 369
Cdd:pfam04795   1 EQALKRAEMARRRKNQSEKRLEEEK 25
 
Name Accession Description Interval E-value
PAPA-1 pfam04795
PAPA-1-like conserved region; Family of proteins with a conserved region found in PAPA-1, a ...
 345-369 1.45e-05

PAPA-1-like conserved region; Family of proteins with a conserved region found in PAPA-1, a PAP-1 binding protein.


Pssm-ID: 461431 [Multi-domain]  Cd Length: 78  Bit Score: 42.55  E-value: 1.45e-05
                          10        20
                  ....*....|....*....|....*
gi 42571267   345 EQQLKKAEAAQRRKVQIEKAARESE 369
Cdd:pfam04795   1 EQALKRAEMARRRKNQSEKRLEEEK 25
 
Name Accession Description Interval E-value
PAPA-1 pfam04795
PAPA-1-like conserved region; Family of proteins with a conserved region found in PAPA-1, a ...
 345-369 1.45e-05

PAPA-1-like conserved region; Family of proteins with a conserved region found in PAPA-1, a PAP-1 binding protein.


Pssm-ID: 461431 [Multi-domain]  Cd Length: 78  Bit Score: 42.55  E-value: 1.45e-05
                          10        20
                  ....*....|....*....|....*
gi 42571267   345 EQQLKKAEAAQRRKVQIEKAARESE 369
Cdd:pfam04795   1 EQALKRAEMARRRKNQSEKRLEEEK 25
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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