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    PDE149 integral membrane TerC family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 831086, updated on 18-Sep-2024

    Summary

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    Official Symbol
    PDE149
    Official Full Name
    integral membrane TerC family protein
    Primary source
    TAIR:AT5G12130
    Locus tag
    AT5G12130
    See related
    Araport:AT5G12130
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATTERC; MXC9.9; MXC9_9; PIGMENT DEFECTIVE 149; TELLURITE RESISTANCE C
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    Genomic context

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    See PDE149 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    14
    Sequence:
    Chromosome: 5; NC_003076.8 (3919428..3922485)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene pentatricopeptide (PPR) repeat-containing protein Neighboring gene elongation factor 1-beta 1 Neighboring gene Ubiquitin-associated/translation elongation factor EF1B protein Neighboring gene cystatin-1 Neighboring gene Rho GTPase activation protein (RhoGAP) with PH domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Deletion of the chloroplast-localized AtTerC gene product in Arabidopsis thaliana leads to loss of the thylakoid membrane and to seedling lethality. Kwon KC, et al. Plant J, 2008 Aug. PMID 18429937
    2. The Arabidopsis Tellurite resistance C protein together with ALB3 is involved in photosystem II protein synthesis. Schneider A, et al. Plant J, 2014 Apr. PMID 24612058
    3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. TerC, together with ALB3, facilitates de novo synthesis of thylakoid membrane proteins.
      Title: The Arabidopsis Tellurite resistance C protein together with ALB3 is involved in photosystem II protein synthesis.
    2. AtTerC protein plays a crucial role in prothylakoid membrane biogenesis and thylakoid formation in early chloroplast development. [AtTerC]
      Title: Deletion of the chloroplast-localized AtTerC gene product in Arabidopsis thaliana leads to loss of the thylakoid membrane and to seedling lethality.
    Submit: New GeneRIF Correction

    General gene information

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    NM_001343228.1
    NM_121251.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within seedling development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within thylakoid membrane organization IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast thylakoid IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in chloroplast thylakoid membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plasma membrane ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    integral membrane TerC family protein
    NP_568257.1
    • PIGMENT DEFECTIVE 149 (PDE149); CONTAINS InterPro DOMAIN/s: Integral membrane protein TerC (InterPro:IPR005496), Integral membrane protein TerC, riboswitch-linked (InterPro:IPR022369); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      3919428..3922485
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_121251.4 → NP_568257.1  integral membrane TerC family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4JZG9, Q8LCU5, Q8VY96, Q9FMP9
      UniProtKB/TrEMBL
      A0A178UPZ0, A0A5S9Y3T9
      Conserved Domains (1) summary
      cl10468
      Location:112 → 377
      TerC; Integral membrane protein TerC family

    2. NM_001343228.1 → NP_001331346.1  integral membrane TerC family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BDK4, A0A5S9Y3T9
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    F4JZG9.1

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