LOCUS NM_121251 1671 bp mRNA linear PLN 20-OCT-2022
DEFINITION Arabidopsis thaliana integral membrane TerC family protein
(PDE149), mRNA.
ACCESSION NM_121251
VERSION NM_121251.4
DBLINK BioProject: PRJNA116
BioSample: SAMN03081427
KEYWORDS RefSeq.
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 1671)
AUTHORS Tabata,S., Kaneko,T., Nakamura,Y., Kotani,H., Kato,T., Asamizu,E.,
Miyajima,N., Sasamoto,S., Kimura,T., Hosouchi,T., Kawashima,K.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Naruo,K., Okumura,S., Shinpo,S., Takeuchi,C., Wada,T.,
Watanabe,A., Yamada,M., Yasuda,M., Sato,S., de la Bastide,M.,
Huang,E., Spiegel,L., Gnoj,L., O'Shaughnessy,A., Preston,R.,
Habermann,K., Murray,J., Johnson,D., Rohlfing,T., Nelson,J.,
Stoneking,T., Pepin,K., Spieth,J., Sekhon,M., Armstrong,J.,
Becker,M., Belter,E., Cordum,H., Cordes,M., Courtney,L.,
Courtney,W., Dante,M., Du,H., Edwards,J., Fryman,J., Haakensen,B.,
Lamar,E., Latreille,P., Leonard,S., Meyer,R., Mulvaney,E.,
Ozersky,P., Riley,A., Strowmatt,C., Wagner-McPherson,C., Wollam,A.,
Yoakum,M., Bell,M., Dedhia,N., Parnell,L., Shah,R., Rodriguez,M.,
See,L.H., Vil,D., Baker,J., Kirchoff,K., Toth,K., King,L.,
Bahret,A., Miller,B., Marra,M., Martienssen,R., McCombie,W.R.,
Wilson,R.K., Murphy,G., Bancroft,I., Volckaert,G., Wambutt,R.,
Dusterhoft,A., Stiekema,W., Pohl,T., Entian,K.D., Terryn,N.,
Hartley,N., Bent,E., Johnson,S., Langham,S.A., McCullagh,B.,
Robben,J., Grymonprez,B., Zimmermann,W., Ramsperger,U., Wedler,H.,
Balke,K., Wedler,E., Peters,S., van Staveren,M., Dirkse,W.,
Mooijman,P., Lankhorst,R.K., Weitzenegger,T., Bothe,G., Rose,M.,
Hauf,J., Berneiser,S., Hempel,S., Feldpausch,M., Lamberth,S.,
Villarroel,R., Gielen,J., Ardiles,W., Bents,O., Lemcke,K.,
Kolesov,G., Mayer,K., Rudd,S., Schoof,H., Schueller,C.,
Zaccaria,P., Mewes,H.W., Bevan,M. and Fransz,P.
CONSRTM Kazusa DNA Research Institute; Cold Spring Harbor and Washington
University in St Louis Sequencing Consortium; European Union
Arabidopsis Genome Sequencing Consortium
TITLE Sequence and analysis of chromosome 5 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 823-826 (2000)
PUBMED 11130714
REFERENCE 2 (bases 1 to 1671)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 1671)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
REFERENCE 4 (bases 1 to 1671)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
This record is derived from an annotated genomic sequence
(NC_003076).
On Sep 12, 2016 this sequence version replaced NM_121251.3.
FEATURES Location/Qualifiers
source 1..1671
/organism="Arabidopsis thaliana"
/mol_type="mRNA"
/db_xref="taxon:3702"
/chromosome="5"
/ecotype="Columbia"
gene 1..1671
/gene="PDE149"
/locus_tag="AT5G12130"
/gene_synonym="ATTERC; MXC9.9; MXC9_9; PIGMENT DEFECTIVE
149; TELLURITE RESISTANCE C"
/db_xref="Araport:AT5G12130"
/db_xref="GeneID:831086"
/db_xref="TAIR:AT5G12130"
CDS 186..1340
/gene="PDE149"
/locus_tag="AT5G12130"
/gene_synonym="ATTERC; MXC9.9; MXC9_9; PIGMENT DEFECTIVE
149; TELLURITE RESISTANCE C"
/inference="Similar to RNA sequence,
EST:INSD:AV556256.1,INSD:EL064599.1,INSD:EL027972.1,
INSD:EH888224.1,INSD:EG506287.1,INSD:EL198485.1,
INSD:DR285713.1,INSD:EL213021.1,INSD:CB255389.1,
INSD:DR373719.1,INSD:EL190110.1,INSD:DR381626.1,
INSD:ES065224.1,INSD:EL242706.1,INSD:EH952980.1,
INSD:EH925700.1,INSD:DR285711.1,INSD:EL116571.1,
INSD:EL079940.1,INSD:EL208116.1,INSD:EH939467.1,
INSD:DR285712.1,INSD:EH835217.1,INSD:DR271842.1,
INSD:ES187671.1,INSD:DR271843.1,INSD:EL268725.1,
INSD:EH907078.1,INSD:AV557070.1"
/inference="similar to RNA sequence,
mRNA:INSD:BX831590.1,INSD:BX841655.1,INSD:AY086401.1,
INSD:BX832097.1"
/note="PIGMENT DEFECTIVE 149 (PDE149); CONTAINS InterPro
DOMAIN/s: Integral membrane protein TerC
(InterPro:IPR005496), Integral membrane protein TerC,
riboswitch-linked (InterPro:IPR022369); Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink)."
/codon_start=1
/product="integral membrane TerC family protein"
/protein_id="NP_568257.1"
/db_xref="GeneID:831086"
/db_xref="TAIR:AT5G12130"
/db_xref="Araport:AT5G12130"
/translation="MSLASVIHHGILPPAKSDRIFLTIPVFPPDFRARGWTKSPFSLL
INPSLASAANRRLSHLPPIACSRGIDQEDEEKESRELLPHKNDENATTSRSSSSVDSG
GLKDYQQEETYKTSFKTVALCVGTAVAFGIGIGLKEGVGKASEFFAGYILEQSLSVDN
LFVFVLVFKYFKVPLMYQNKVLTYGIAGAIVFRFTLILLGTATLQKFEAVNLLLAAVL
LYSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTSSYDGNRFFTKHDGILKATPLLLTV
AVIELSDIAFAVDSIPAVFGVTRDPFIVLTSNLFAILGLRSLYTLISEGMDELEYLQP
SIAVVLGFIGVKMILDFFGFHISTEASLGVVALSLSTGVLLSLTNKSSDS"
ORIGIN
1 aaactgtacc atagtattaa ttaaaaatct aaaaaaccgg aaaactcaaa accgaaatca
61 atgaaccagc caaaaggagg ggtatcatcg tctaatatct gaaacgacaa cgttttgagt
121 ggtcttcgcc gattgatata gttggggtca ctcggagtct gtttttggat ttgacacaaa
181 acgcaatgag cttagcttca gttatccacc acggaattct ccctccggcc aaatcggatc
241 gaatctttct taccattccg gtgttcccgc cggatttcag agctcgtgga tggactaagt
301 ctcctttctc tctccttata aatccctctc ttgcttcagc tgccaatcgt cgtctctctc
361 atcttcctcc tatcgcgtgt tccagaggta ttgatcagga agatgaagag aaggagagca
421 gagaacttct accacacaaa aacgatgaga atgcaaccac ttcacgctct tcttcatcag
481 tagatagtgg aggcctgaaa gattatcaac aagaagaaac ttacaaaact tccttcaaga
541 ctgttgcctt gtgtgttggc actgcggtgg catttggaat tggaataggt ttgaaggaag
601 gtgttggcaa ggcttcagag tttttcgcag gctacatatt ggagcaaagc ttgtcagtgg
661 acaacttgtt tgtttttgtt cttgttttca agtatttcaa agtgccactc atgtatcaga
721 ataaggtact tacctacggt atagctggtg caattgtttt ccgtttcacg ctcattttac
781 taggaacagc tactcttcag aaatttgaag cagtcaacct actgcttgct gctgtactct
841 tatattcgtc attcaagtta tttgcaagtg aagaagatga tacagatcta tcggacaact
901 tcattgtaaa gacatgccag agatttattc ctgtcacatc aagttacgat ggaaatcgat
961 ttttcacaaa gcatgatggc attttgaaag ccacaccatt gctacttaca gtagcagtga
1021 tcgagctcag tgacatagca tttgcggttg actcaatacc agctgttttt ggcgtcacaa
1081 gggatccttt tattgtcttg acttctaatc tctttgcaat cctaggacta aggtctctct
1141 atacactgat ttctgaagga atggacgagc tggaatactt gcagccatca atagcagttg
1201 ttcttggctt cataggagtc aagatgatcc ttgatttctt tggcttccac atatcaacag
1261 aggcatcact tggtgtcgtt gcactttctc tcagtaccgg agtactgttg agcctaacaa
1321 acaaatccag cgacagctaa ctaagaactg agagctgact actgagaaac agaatccaga
1381 tgtatccaac cacacagttc ataagaataa tatcgcattg ttcatcaaag catttcgctg
1441 atgtgttact gtagataaaa cacacagaaa gggcattctt tccaagactc gtattctact
1501 ttttgttttg tcgttaaaaa agcagcaaag aacaagacac tttaaatcta tttgtctgga
1561 agacatgtgg ttgagcccca tgattgcttt gagacgagta gaactgtctt tgatcgtcaa
1621 gtcatcccat gtgccgcttg gtgctcatct tataagatta ttcctttgga c
//