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Arabidopsis thaliana integral membrane TerC family protein (PDE149), mRNA

NCBI Reference Sequence: NM_121251.4

FASTA Graphics 

LOCUS       NM_121251               1671 bp    mRNA    linear   PLN 20-OCT-2022
DEFINITION  Arabidopsis thaliana integral membrane TerC family protein
            (PDE149), mRNA.
ACCESSION   NM_121251
VERSION     NM_121251.4
DBLINK      BioProject: PRJNA116
            BioSample: SAMN03081427
KEYWORDS    RefSeq.
SOURCE      Arabidopsis thaliana (thale cress)
  ORGANISM  Arabidopsis thaliana
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Camelineae; Arabidopsis.
REFERENCE   1  (bases 1 to 1671)
  AUTHORS   Tabata,S., Kaneko,T., Nakamura,Y., Kotani,H., Kato,T., Asamizu,E.,
            Miyajima,N., Sasamoto,S., Kimura,T., Hosouchi,T., Kawashima,K.,
            Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
            Nakazaki,N., Naruo,K., Okumura,S., Shinpo,S., Takeuchi,C., Wada,T.,
            Watanabe,A., Yamada,M., Yasuda,M., Sato,S., de la Bastide,M.,
            Huang,E., Spiegel,L., Gnoj,L., O'Shaughnessy,A., Preston,R.,
            Habermann,K., Murray,J., Johnson,D., Rohlfing,T., Nelson,J.,
            Stoneking,T., Pepin,K., Spieth,J., Sekhon,M., Armstrong,J.,
            Becker,M., Belter,E., Cordum,H., Cordes,M., Courtney,L.,
            Courtney,W., Dante,M., Du,H., Edwards,J., Fryman,J., Haakensen,B.,
            Lamar,E., Latreille,P., Leonard,S., Meyer,R., Mulvaney,E.,
            Ozersky,P., Riley,A., Strowmatt,C., Wagner-McPherson,C., Wollam,A.,
            Yoakum,M., Bell,M., Dedhia,N., Parnell,L., Shah,R., Rodriguez,M.,
            See,L.H., Vil,D., Baker,J., Kirchoff,K., Toth,K., King,L.,
            Bahret,A., Miller,B., Marra,M., Martienssen,R., McCombie,W.R.,
            Wilson,R.K., Murphy,G., Bancroft,I., Volckaert,G., Wambutt,R.,
            Dusterhoft,A., Stiekema,W., Pohl,T., Entian,K.D., Terryn,N.,
            Hartley,N., Bent,E., Johnson,S., Langham,S.A., McCullagh,B.,
            Robben,J., Grymonprez,B., Zimmermann,W., Ramsperger,U., Wedler,H.,
            Balke,K., Wedler,E., Peters,S., van Staveren,M., Dirkse,W.,
            Mooijman,P., Lankhorst,R.K., Weitzenegger,T., Bothe,G., Rose,M.,
            Hauf,J., Berneiser,S., Hempel,S., Feldpausch,M., Lamberth,S.,
            Villarroel,R., Gielen,J., Ardiles,W., Bents,O., Lemcke,K.,
            Kolesov,G., Mayer,K., Rudd,S., Schoof,H., Schueller,C.,
            Zaccaria,P., Mewes,H.W., Bevan,M. and Fransz,P.
  CONSRTM   Kazusa DNA Research Institute; Cold Spring Harbor and Washington
            University in St Louis Sequencing Consortium; European Union
            Arabidopsis Genome Sequencing Consortium
  TITLE     Sequence and analysis of chromosome 5 of the plant Arabidopsis
            thaliana
  JOURNAL   Nature 408 (6814), 823-826 (2000)
   PUBMED   11130714
REFERENCE   2  (bases 1 to 1671)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 1671)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   4  (bases 1 to 1671)
  AUTHORS   Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
  CONSRTM   TAIR
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
            Institution, 260 Panama Street, Stanford, CA, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
            This record is derived from an annotated genomic sequence
            (NC_003076).
            
            On Sep 12, 2016 this sequence version replaced NM_121251.3.
FEATURES             Location/Qualifiers
     source          1..1671
                     /organism="Arabidopsis thaliana"
                     /mol_type="mRNA"
                     /db_xref="taxon:3702"
                     /chromosome="5"
                     /ecotype="Columbia"
     gene            1..1671
                     /gene="PDE149"
                     /locus_tag="AT5G12130"
                     /gene_synonym="ATTERC; MXC9.9; MXC9_9; PIGMENT DEFECTIVE
                     149; TELLURITE RESISTANCE C"
                     /db_xref="Araport:AT5G12130"
                     /db_xref="GeneID:831086"
                     /db_xref="TAIR:AT5G12130"
     CDS             186..1340
                     /gene="PDE149"
                     /locus_tag="AT5G12130"
                     /gene_synonym="ATTERC; MXC9.9; MXC9_9; PIGMENT DEFECTIVE
                     149; TELLURITE RESISTANCE C"
                     /inference="Similar to RNA sequence,
                     EST:INSD:AV556256.1,INSD:EL064599.1,INSD:EL027972.1,
                     INSD:EH888224.1,INSD:EG506287.1,INSD:EL198485.1,
                     INSD:DR285713.1,INSD:EL213021.1,INSD:CB255389.1,
                     INSD:DR373719.1,INSD:EL190110.1,INSD:DR381626.1,
                     INSD:ES065224.1,INSD:EL242706.1,INSD:EH952980.1,
                     INSD:EH925700.1,INSD:DR285711.1,INSD:EL116571.1,
                     INSD:EL079940.1,INSD:EL208116.1,INSD:EH939467.1,
                     INSD:DR285712.1,INSD:EH835217.1,INSD:DR271842.1,
                     INSD:ES187671.1,INSD:DR271843.1,INSD:EL268725.1,
                     INSD:EH907078.1,INSD:AV557070.1"
                     /inference="similar to RNA sequence,
                     mRNA:INSD:BX831590.1,INSD:BX841655.1,INSD:AY086401.1,
                     INSD:BX832097.1"
                     /note="PIGMENT DEFECTIVE 149 (PDE149); CONTAINS InterPro
                     DOMAIN/s: Integral membrane protein TerC
                     (InterPro:IPR005496), Integral membrane protein TerC,
                     riboswitch-linked (InterPro:IPR022369); Has 30201 Blast
                     hits to 17322 proteins in 780 species: Archae - 12;
                     Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
                     5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
                     BLink)."
                     /codon_start=1
                     /product="integral membrane TerC family protein"
                     /protein_id="NP_568257.1"
                     /db_xref="GeneID:831086"
                     /db_xref="TAIR:AT5G12130"
                     /db_xref="Araport:AT5G12130"
                     /translation="MSLASVIHHGILPPAKSDRIFLTIPVFPPDFRARGWTKSPFSLL
                     INPSLASAANRRLSHLPPIACSRGIDQEDEEKESRELLPHKNDENATTSRSSSSVDSG
                     GLKDYQQEETYKTSFKTVALCVGTAVAFGIGIGLKEGVGKASEFFAGYILEQSLSVDN
                     LFVFVLVFKYFKVPLMYQNKVLTYGIAGAIVFRFTLILLGTATLQKFEAVNLLLAAVL
                     LYSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTSSYDGNRFFTKHDGILKATPLLLTV
                     AVIELSDIAFAVDSIPAVFGVTRDPFIVLTSNLFAILGLRSLYTLISEGMDELEYLQP
                     SIAVVLGFIGVKMILDFFGFHISTEASLGVVALSLSTGVLLSLTNKSSDS"
ORIGIN      
        1 aaactgtacc atagtattaa ttaaaaatct aaaaaaccgg aaaactcaaa accgaaatca
       61 atgaaccagc caaaaggagg ggtatcatcg tctaatatct gaaacgacaa cgttttgagt
      121 ggtcttcgcc gattgatata gttggggtca ctcggagtct gtttttggat ttgacacaaa
      181 acgcaatgag cttagcttca gttatccacc acggaattct ccctccggcc aaatcggatc
      241 gaatctttct taccattccg gtgttcccgc cggatttcag agctcgtgga tggactaagt
      301 ctcctttctc tctccttata aatccctctc ttgcttcagc tgccaatcgt cgtctctctc
      361 atcttcctcc tatcgcgtgt tccagaggta ttgatcagga agatgaagag aaggagagca
      421 gagaacttct accacacaaa aacgatgaga atgcaaccac ttcacgctct tcttcatcag
      481 tagatagtgg aggcctgaaa gattatcaac aagaagaaac ttacaaaact tccttcaaga
      541 ctgttgcctt gtgtgttggc actgcggtgg catttggaat tggaataggt ttgaaggaag
      601 gtgttggcaa ggcttcagag tttttcgcag gctacatatt ggagcaaagc ttgtcagtgg
      661 acaacttgtt tgtttttgtt cttgttttca agtatttcaa agtgccactc atgtatcaga
      721 ataaggtact tacctacggt atagctggtg caattgtttt ccgtttcacg ctcattttac
      781 taggaacagc tactcttcag aaatttgaag cagtcaacct actgcttgct gctgtactct
      841 tatattcgtc attcaagtta tttgcaagtg aagaagatga tacagatcta tcggacaact
      901 tcattgtaaa gacatgccag agatttattc ctgtcacatc aagttacgat ggaaatcgat
      961 ttttcacaaa gcatgatggc attttgaaag ccacaccatt gctacttaca gtagcagtga
     1021 tcgagctcag tgacatagca tttgcggttg actcaatacc agctgttttt ggcgtcacaa
     1081 gggatccttt tattgtcttg acttctaatc tctttgcaat cctaggacta aggtctctct
     1141 atacactgat ttctgaagga atggacgagc tggaatactt gcagccatca atagcagttg
     1201 ttcttggctt cataggagtc aagatgatcc ttgatttctt tggcttccac atatcaacag
     1261 aggcatcact tggtgtcgtt gcactttctc tcagtaccgg agtactgttg agcctaacaa
     1321 acaaatccag cgacagctaa ctaagaactg agagctgact actgagaaac agaatccaga
     1381 tgtatccaac cacacagttc ataagaataa tatcgcattg ttcatcaaag catttcgctg
     1441 atgtgttact gtagataaaa cacacagaaa gggcattctt tccaagactc gtattctact
     1501 ttttgttttg tcgttaaaaa agcagcaaag aacaagacac tttaaatcta tttgtctgga
     1561 agacatgtgg ttgagcccca tgattgcttt gagacgagta gaactgtctt tgatcgtcaa
     1621 gtcatcccat gtgccgcttg gtgctcatct tataagatta ttcctttgga c
//
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Reference sequence information

More about the PDE149 gene

  • PDE149 gene
    Also Known As: AT5G12130, ATTERC, MXC9...

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