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    ATP-dependent helicase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 817370, updated on 18-Sep-2024

    Summary

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    Official Full Name
    ATP-dependent helicase family protein
    Primary source
    TAIR:AT2G28240
    Locus tag
    AT2G28240
    See related
    Araport:AT2G28240
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T3B23.9; T3B23_9
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    6
    Sequence:
    Chromosome: 2; NC_003071.7 (12039208..12042175)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene aspartic proteinase CDR1-like protein Neighboring gene TATA-binding related factor (TRF) of subunit 20 of Mediator complex Neighboring gene ncRNA Neighboring gene Protein kinase superfamily protein Neighboring gene ncRNA Neighboring gene cyclic nucleotide-gated channel 15

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The MOM1 complex recruits the RdDM machinery via MORC6 to establish de novo DNA methylation. Li Z, et al. bioRxiv, 2023 Jan 10. PMID 36711532, Free PMC Article
    2. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    3. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001336152.1
    NM_128384.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in heterochromatin formation IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    ATP-dependent helicase family protein
    NP_180391.2
    • ATP-dependent helicase family protein; BEST Arabidopsis thaliana protein match is: ATP-dependent helicase family protein (TAIR:AT1G08060.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      12039208..12042175
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_128384.4 → NP_180391.2  ATP-dependent helicase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_180391.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VZ81, A0A7G2EBQ8, Q84JK0
      Conserved Domains (1) summary
      PHA03247
      Location:314 → 636
      PHA03247; large tegument protein UL36; Provisional

    2. NM_001336152.1 → NP_001324761.1  ATP-dependent helicase family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B130, A0A7G2EBQ8
    Nucleotide Protein
    Heading Accession and Version

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