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    CNGC15 cyclic nucleotide-gated channel 15 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 817372, updated on 18-Sep-2024

    Summary

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    Official Symbol
    CNGC15
    Official Full Name
    cyclic nucleotide-gated channel 15
    Primary source
    TAIR:AT2G28260
    Locus tag
    AT2G28260
    See related
    Araport:AT2G28260
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATCNGC15; cyclic nucleotide-gated channel 15; T3B23.7; T3B23_7
    Summary
    member of Cyclic nucleotide gated channel family
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    Genomic context

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    See CNGC15 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    6
    Sequence:
    Chromosome: 2; NC_003071.7 (12049443..12052643)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene ATP-dependent helicase family protein Neighboring gene ncRNA Neighboring gene Protein kinase superfamily protein Neighboring gene ncRNA Neighboring gene Cysteine/Histidine-rich C1 domain family protein Neighboring gene miscRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A novel mutant allele of AtCNGC15 reveals a dual function of nuclear calcium release in the root meristem. Tipper E, et al. J Exp Bot, 2023 Apr 18. PMID 36715622, Free PMC Article
    2. A transceptor-channel complex couples nitrate sensing to calcium signaling in Arabidopsis. Wang X, et al. Mol Plant, 2021 May 3. PMID 33601051
    3. Nuclear calcium signatures are associated with root development. Leitão N, et al. Nat Commun, 2019 Oct 25. PMID 31653864, Free PMC Article
    4. Genome-Wide Identification and Characterization of Calcium Metabolism Related Gene Families in Arabidopsis thaliana and Their Regulation by Bacillus amyloliquefaciens Under High Calcium Stress. Gong J, et al. Front Plant Sci, 2021. PMID 34456948, Free PMC Article
    5. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001336157.1
    NM_128386.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables calcium ion transmembrane transporter activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables voltage-gated potassium channel activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in calcium ion transmembrane transport IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in cellular response to nitrate IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in response to bacterium IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in response to calcium ion IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cyclic nucleotide-gated channel 15
    NP_180393.1
    • cyclic nucleotide-gated channel 15 (CNGC15); FUNCTIONS IN: cyclic nucleotide binding, calmodulin binding, cation channel activity; INVOLVED IN: potassium ion transport, ion transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Potassium channel, voltage-dependent, EAG/ELK/ERG (InterPro:IPR003938), Ion transport (InterPro:IPR005821), Cyclic nucleotide-binding-like (InterPro:IPR018490), RmlC-like jelly roll fold (InterPro:IPR014710), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: cyclic nucleotide-gated channel 14 (TAIR:AT2G24610.1); Has 3177 Blast hits to 3099 proteins in 290 species: Archae - 0; Bacteria - 161; Metazoa - 1483; Fungi - 19; Plants - 962; Viruses - 0; Other Eukaryotes - 552 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      12049443..12052643
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_128386.2 → NP_180393.1  cyclic nucleotide-gated channel 15 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_180393.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SL29
      UniProtKB/TrEMBL
      A0A178VZ07, A0A5S9X1Y1, A0A7G2ED22
      Conserved Domains (2) summary
      PLN03192
      Location:127 → 489
      PLN03192; Voltage-dependent potassium channel; Provisional
      cd00038
      Location:471 → 602
      CAP_ED; effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO ...

    2. NM_001336157.1 → NP_001324840.1  cyclic nucleotide-gated channel 15 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B1B6, A0A7G2ED22
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SL29.1

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