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    Peptidase C13 family [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 837397, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Peptidase C13 family
    Primary source
    TAIR:AT1G08750
    Locus tag
    AT1G08750
    See related
    Araport:AT1G08750
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F22O13.24; F22O13_24
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    10
    Sequence:
    Chromosome: 1; NC_003070.9 (2801042..2804711)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene pseudo Neighboring gene GPI-anchored adhesin-like protein, putative (DUF936) Neighboring gene prenylated RAB acceptor 1.E

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A Mutation in the Catalytic Subunit of the Glycosylphosphatidylinositol Transamidase Disrupts Growth, Fertility, and Stomata Formation. Bundy MG, et al. Plant Physiol, 2016 Jun. PMID 27208238, Free PMC Article
    2. Putative glycosyltransferases and other plant Golgi apparatus proteins are revealed by LOPIT proteomics. Nikolovski N, et al. Plant Physiol, 2012 Oct. PMID 22923678, Free PMC Article
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. The tmm-1 mutation is epistatic to the atgpi8-1 mutation, indicating that either TMM is a GPI-AP or there is another GPI-AP regulating stomata development whose function is dependent upon TMM.
      Title: A Mutation in the Catalytic Subunit of the Glycosylphosphatidylinositol Transamidase Disrupts Growth, Fertility, and Stomata Formation.
    Submit: New GeneRIF Correction

    General gene information

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    NM_100749.3
    NM_179285.1
    NM_202065.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables GPI-anchor transamidase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in attachment of GPI anchor to protein IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within stomatal complex patterning IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of GPI-anchor transamidase complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in endoplasmic reticulum HDA PubMed 

    General protein information

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    Preferred Names
    Peptidase C13 family
    NP_563825.1
    • Peptidase C13 family; FUNCTIONS IN: GPI-anchor transamidase activity, cysteine-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C13, legumain (InterPro:IPR001096); BEST Arabidopsis thaliana protein match is: alpha-vacuolar processing enzyme (TAIR:AT2G25940.1); Has 779 Blast hits to 778 proteins in 243 species: Archae - 4; Bacteria - 12; Metazoa - 279; Fungi - 120; Plants - 231; Viruses - 0; Other Eukaryotes - 133 (source: NCBI BLink).
    NP_849616.1
    • Peptidase C13 family; FUNCTIONS IN: GPI-anchor transamidase activity, cysteine-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C13, legumain (InterPro:IPR001096); BEST Arabidopsis thaliana protein match is: alpha-vacuolar processing enzyme (TAIR:AT2G25940.1); Has 779 Blast hits to 778 proteins in 243 species: Archae - 4; Bacteria - 12; Metazoa - 279; Fungi - 120; Plants - 231; Viruses - 0; Other Eukaryotes - 133 (source: NCBI BLink).
    NP_973794.1
    • Peptidase C13 family; FUNCTIONS IN: GPI-anchor transamidase activity, cysteine-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C13, legumain (InterPro:IPR001096); BEST Arabidopsis thaliana protein match is: alpha-vacuolar processing enzyme (TAIR:AT2G25940.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      2801042..2804711
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_100749.3 → NP_563825.1  Peptidase C13 family [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_563825.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WNN3, A0A5S9TDS8, Q8GYI6, Q8LFF3
      Conserved Domains (1) summary
      cl00042
      Location:24 → 344
      CASc; Caspase, interleukin-1 beta converting enzyme (ICE) homologues; Cysteine-dependent aspartate-directed proteases that mediate programmed cell death (apoptosis). Caspases are synthesized as inactive zymogens and activated by proteolysis of the peptide ...

    2. NM_202065.3 → NP_973794.1  Peptidase C13 family [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_973794.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WNN3, A0A5S9TDS8, Q8GYI6, Q8LFF3
      Conserved Domains (1) summary
      cl00042
      Location:24 → 344
      CASc; Caspase, interleukin-1 beta converting enzyme (ICE) homologues; Cysteine-dependent aspartate-directed proteases that mediate programmed cell death (apoptosis). Caspases are synthesized as inactive zymogens and activated by proteolysis of the peptide ...

    3. NM_179285.1 → NP_849616.1  Peptidase C13 family [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_849616.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WNN3, A0A5S9TDS8, Q8GYI6, Q8LFF3
      Conserved Domains (1) summary
      cl00042
      Location:24 → 344
      CASc; Caspase, interleukin-1 beta converting enzyme (ICE) homologues; Cysteine-dependent aspartate-directed proteases that mediate programmed cell death (apoptosis). Caspases are synthesized as inactive zymogens and activated by proteolysis of the peptide ...
    Nucleotide Protein
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