LOCUS NM_179285 1388 bp mRNA linear PLN 20-OCT-2022
DEFINITION Arabidopsis thaliana Peptidase C13 family (AT1G08750), mRNA.
ACCESSION NM_179285
VERSION NM_179285.1
DBLINK BioProject: PRJNA116
BioSample: SAMN03081427
KEYWORDS RefSeq.
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 1388)
AUTHORS Theologis,A., Ecker,J.R., Palm,C.J., Federspiel,N.A., Kaul,S.,
White,O., Alonso,J., Altafi,H., Araujo,R., Bowman,C.L.,
Brooks,S.Y., Buehler,E., Chan,A., Chao,Q., Chen,H., Cheuk,R.F.,
Chin,C.W., Chung,M.K., Conn,L., Conway,A.B., Conway,A.R.,
Creasy,T.H., Dewar,K., Dunn,P., Etgu,P., Feldblyum,T.V., Feng,J.,
Fong,B., Fujii,C.Y., Gill,J.E., Goldsmith,A.D., Haas,B.,
Hansen,N.F., Hughes,B., Huizar,L., Hunter,J.L., Jenkins,J.,
Johnson-Hopson,C., Khan,S., Khaykin,E., Kim,C.J., Koo,H.L.,
Kremenetskaia,I., Kurtz,D.B., Kwan,A., Lam,B., Langin-Hooper,S.,
Lee,A., Lee,J.M., Lenz,C.A., Li,J.H., Li,Y., Lin,X., Liu,S.X.,
Liu,Z.A., Luros,J.S., Maiti,R., Marziali,A., Militscher,J.,
Miranda,M., Nguyen,M., Nierman,W.C., Osborne,B.I., Pai,G.,
Peterson,J., Pham,P.K., Rizzo,M., Rooney,T., Rowley,D., Sakano,H.,
Salzberg,S.L., Schwartz,J.R., Shinn,P., Southwick,A.M., Sun,H.,
Tallon,L.J., Tambunga,G., Toriumi,M.J., Town,C.D., Utterback,T.,
Van Aken,S., Vaysberg,M., Vysotskaia,V.S., Walker,M., Wu,D., Yu,G.,
Fraser,C.M., Venter,J.C. and Davis,R.W.
TITLE Sequence and analysis of chromosome 1 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 816-820 (2000)
PUBMED 11130712
REFERENCE 2 (bases 1 to 1388)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 1388)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (18-JUL-2017) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
REFERENCE 4 (bases 1 to 1388)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
REFERENCE 5 (bases 1 to 1388)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
This record is derived from an annotated genomic sequence
(NC_003070).
FEATURES Location/Qualifiers
source 1..1388
/organism="Arabidopsis thaliana"
/mol_type="mRNA"
/db_xref="taxon:3702"
/chromosome="1"
/ecotype="Columbia"
gene 1..1388
/locus_tag="AT1G08750"
/gene_synonym="F22O13.24; F22O13_24"
/db_xref="Araport:AT1G08750"
/db_xref="GeneID:837397"
/db_xref="TAIR:AT1G08750"
CDS 77..1243
/locus_tag="AT1G08750"
/gene_synonym="F22O13.24; F22O13_24"
/inference="Similar to RNA sequence,
EST:INSD:BP632438.1,INSD:EG511888.1,INSD:EG529340.1,
INSD:CD529323.1,INSD:ES106193.1,INSD:EG525041.1,
INSD:BP625327.1,INSD:DR380211.1,INSD:AU238433.1,
INSD:AI998092.1,INSD:AU229619.1,INSD:ES164715.1"
/inference="similar to RNA sequence, mRNA:INSD:AK117596.1"
/note="Peptidase C13 family; FUNCTIONS IN: GPI-anchor
transamidase activity, cysteine-type endopeptidase
activity; INVOLVED IN: proteolysis; LOCATED IN:
endomembrane system; EXPRESSED IN: 23 plant structures;
EXPRESSED DURING: 13 growth stages; CONTAINS InterPro
DOMAIN/s: Peptidase C13, legumain (InterPro:IPR001096);
BEST Arabidopsis thaliana protein match is: alpha-vacuolar
processing enzyme (TAIR:AT2G25940.1); Has 779 Blast hits
to 778 proteins in 243 species: Archae - 4; Bacteria - 12;
Metazoa - 279; Fungi - 120; Plants - 231; Viruses - 0;
Other Eukaryotes - 133 (source: NCBI BLink)."
/codon_start=1
/product="Peptidase C13 family"
/protein_id="NP_849616.1"
/db_xref="Araport:AT1G08750"
/db_xref="GeneID:837397"
/db_xref="TAIR:AT1G08750"
/translation="MKILTLVMLLCYSFVSSTGDTTIHTNNWAVLVCTSRFWFNYRHM
ANTLSLYRTVKRLGIPDERIILMLADDMACNARNEYPAQVFNNENHKLNLYGDNVEVD
YRGYEVTVENFLRVLTGRHENAVPRSKRLLSDEGSHILLYMTGHGGDEFLKFQDAEEL
QSHDLADAVKQMKEKRRFKELMIMVDTCQAATLFNQLQSPGVLAIGSSLKGENSYSHH
LDSDIGVSVVDRFTYYTLAFFERLNIYDNASLNSLFRSYDPRLLMSTAYYRTDLYQPH
LVEVPVTNFFGSVMETIHTDSAYKAFSSKISERKINSEMPFNQLSEHDLKEELENTNI
PNDELIAEKQKCPYSQMRADLHEKVEKLENVDTVVNLSIAVMVLAVMVSSSLLR"
ORIGIN
1 gtttccttcc acgcctccgc cggcaagcta gttttctgac tggagttcca tcgtggacgc
61 cattatcttc ctaaaaatga agattcttac actcgtaatg cttttatgct actcgttcgt
121 ctcttctacc ggagatacga ctatccacac aaacaattgg gctgttttgg tctgcacttc
181 tcgcttctgg tttaactacc ggcacatggc caatactctg tccctctata ggacagtcaa
241 gagacttgga ataccagatg agaggatcat tcttatgctg gctgatgata tggcctgtaa
301 tgctagaaat gaatatcctg ctcaagtttt caacaatgaa aaccacaaac ttaacctcta
361 tggagataac gttgaggtag attatcgtgg atatgaggta acagttgaaa atttcttacg
421 ggttttgact gggcgtcatg agaatgctgt tccaaggtca aagcgtctcc tcagtgatga
481 gggtagccat atactactgt acatgactgg gcatggaggt gatgaatttt tgaagtttca
541 agatgcagaa gaactccaga gtcacgattt agcagatgct gtaaaacaaa tgaaagagaa
601 gcgtagattc aaggagctga tgataatggt tgatacttgc caagctgcca ctctctttaa
661 tcagcttcaa tctcctggtg ttttggctat tggtagcagt ctaaaaggag agaactcata
721 ttcccatcac ctggattcag atattggtgt atctgttgta gatcggttta catattacac
781 tcttgcattc tttgagaggc tcaatatata tgacaatgca tcacttaaca gtttatttag
841 gtcctacgat ccgagactgc taatgtctac tgcctactac cggactgatc tttaccaacc
901 acatctggtg gaggtaccgg tcacaaattt cttcggttca gttatggaga ccattcatac
961 tgattcagct tacaaagctt tctcaagtaa aatctccgaa agaaagatca attctgagat
1021 gccattcaat caactttccg aacacgatct taaagaagag cttgagaata caaacatacc
1081 aaacgatgag ttgatagctg agaagcaaaa atgcccatat tcacaaatgc gggcagacct
1141 ccacgagaaa gtggagaagc ttgaaaatgt cgatacagtg gttaacctca gcatagcagt
1201 gatggtactc gctgtaatgg tctcatcatc tttactacga tgaagaactg atataatcat
1261 ctgcacttca cttaatctat gtagtctgat tcactgttgc agcttcacac ccattttgta
1321 attttttgca caatgctata aaaaaaaatc accaaaatca agaaaatatc aactctcatg
1381 ctcgaacc
//