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Arabidopsis thaliana Peptidase C13 family (AT1G08750), mRNA

NCBI Reference Sequence: NM_179285.1

FASTA Graphics 

LOCUS       NM_179285               1388 bp    mRNA    linear   PLN 20-OCT-2022
DEFINITION  Arabidopsis thaliana Peptidase C13 family (AT1G08750), mRNA.
ACCESSION   NM_179285
VERSION     NM_179285.1
DBLINK      BioProject: PRJNA116
            BioSample: SAMN03081427
KEYWORDS    RefSeq.
SOURCE      Arabidopsis thaliana (thale cress)
  ORGANISM  Arabidopsis thaliana
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Camelineae; Arabidopsis.
REFERENCE   1  (bases 1 to 1388)
  AUTHORS   Theologis,A., Ecker,J.R., Palm,C.J., Federspiel,N.A., Kaul,S.,
            White,O., Alonso,J., Altafi,H., Araujo,R., Bowman,C.L.,
            Brooks,S.Y., Buehler,E., Chan,A., Chao,Q., Chen,H., Cheuk,R.F.,
            Chin,C.W., Chung,M.K., Conn,L., Conway,A.B., Conway,A.R.,
            Creasy,T.H., Dewar,K., Dunn,P., Etgu,P., Feldblyum,T.V., Feng,J.,
            Fong,B., Fujii,C.Y., Gill,J.E., Goldsmith,A.D., Haas,B.,
            Hansen,N.F., Hughes,B., Huizar,L., Hunter,J.L., Jenkins,J.,
            Johnson-Hopson,C., Khan,S., Khaykin,E., Kim,C.J., Koo,H.L.,
            Kremenetskaia,I., Kurtz,D.B., Kwan,A., Lam,B., Langin-Hooper,S.,
            Lee,A., Lee,J.M., Lenz,C.A., Li,J.H., Li,Y., Lin,X., Liu,S.X.,
            Liu,Z.A., Luros,J.S., Maiti,R., Marziali,A., Militscher,J.,
            Miranda,M., Nguyen,M., Nierman,W.C., Osborne,B.I., Pai,G.,
            Peterson,J., Pham,P.K., Rizzo,M., Rooney,T., Rowley,D., Sakano,H.,
            Salzberg,S.L., Schwartz,J.R., Shinn,P., Southwick,A.M., Sun,H.,
            Tallon,L.J., Tambunga,G., Toriumi,M.J., Town,C.D., Utterback,T.,
            Van Aken,S., Vaysberg,M., Vysotskaia,V.S., Walker,M., Wu,D., Yu,G.,
            Fraser,C.M., Venter,J.C. and Davis,R.W.
  TITLE     Sequence and analysis of chromosome 1 of the plant Arabidopsis
            thaliana
  JOURNAL   Nature 408 (6814), 816-820 (2000)
   PUBMED   11130712
REFERENCE   2  (bases 1 to 1388)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 1388)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-JUL-2017) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   4  (bases 1 to 1388)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   5  (bases 1 to 1388)
  AUTHORS   Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
  CONSRTM   TAIR
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
            Institution, 260 Panama Street, Stanford, CA, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
            This record is derived from an annotated genomic sequence
            (NC_003070).
FEATURES             Location/Qualifiers
     source          1..1388
                     /organism="Arabidopsis thaliana"
                     /mol_type="mRNA"
                     /db_xref="taxon:3702"
                     /chromosome="1"
                     /ecotype="Columbia"
     gene            1..1388
                     /locus_tag="AT1G08750"
                     /gene_synonym="F22O13.24; F22O13_24"
                     /db_xref="Araport:AT1G08750"
                     /db_xref="GeneID:837397"
                     /db_xref="TAIR:AT1G08750"
     CDS             77..1243
                     /locus_tag="AT1G08750"
                     /gene_synonym="F22O13.24; F22O13_24"
                     /inference="Similar to RNA sequence,
                     EST:INSD:BP632438.1,INSD:EG511888.1,INSD:EG529340.1,
                     INSD:CD529323.1,INSD:ES106193.1,INSD:EG525041.1,
                     INSD:BP625327.1,INSD:DR380211.1,INSD:AU238433.1,
                     INSD:AI998092.1,INSD:AU229619.1,INSD:ES164715.1"
                     /inference="similar to RNA sequence, mRNA:INSD:AK117596.1"
                     /note="Peptidase C13 family; FUNCTIONS IN: GPI-anchor
                     transamidase activity, cysteine-type endopeptidase
                     activity; INVOLVED IN: proteolysis; LOCATED IN:
                     endomembrane system; EXPRESSED IN: 23 plant structures;
                     EXPRESSED DURING: 13 growth stages; CONTAINS InterPro
                     DOMAIN/s: Peptidase C13, legumain (InterPro:IPR001096);
                     BEST Arabidopsis thaliana protein match is: alpha-vacuolar
                     processing enzyme (TAIR:AT2G25940.1); Has 779 Blast hits
                     to 778 proteins in 243 species: Archae - 4; Bacteria - 12;
                     Metazoa - 279; Fungi - 120; Plants - 231; Viruses - 0;
                     Other Eukaryotes - 133 (source: NCBI BLink)."
                     /codon_start=1
                     /product="Peptidase C13 family"
                     /protein_id="NP_849616.1"
                     /db_xref="Araport:AT1G08750"
                     /db_xref="GeneID:837397"
                     /db_xref="TAIR:AT1G08750"
                     /translation="MKILTLVMLLCYSFVSSTGDTTIHTNNWAVLVCTSRFWFNYRHM
                     ANTLSLYRTVKRLGIPDERIILMLADDMACNARNEYPAQVFNNENHKLNLYGDNVEVD
                     YRGYEVTVENFLRVLTGRHENAVPRSKRLLSDEGSHILLYMTGHGGDEFLKFQDAEEL
                     QSHDLADAVKQMKEKRRFKELMIMVDTCQAATLFNQLQSPGVLAIGSSLKGENSYSHH
                     LDSDIGVSVVDRFTYYTLAFFERLNIYDNASLNSLFRSYDPRLLMSTAYYRTDLYQPH
                     LVEVPVTNFFGSVMETIHTDSAYKAFSSKISERKINSEMPFNQLSEHDLKEELENTNI
                     PNDELIAEKQKCPYSQMRADLHEKVEKLENVDTVVNLSIAVMVLAVMVSSSLLR"
ORIGIN      
        1 gtttccttcc acgcctccgc cggcaagcta gttttctgac tggagttcca tcgtggacgc
       61 cattatcttc ctaaaaatga agattcttac actcgtaatg cttttatgct actcgttcgt
      121 ctcttctacc ggagatacga ctatccacac aaacaattgg gctgttttgg tctgcacttc
      181 tcgcttctgg tttaactacc ggcacatggc caatactctg tccctctata ggacagtcaa
      241 gagacttgga ataccagatg agaggatcat tcttatgctg gctgatgata tggcctgtaa
      301 tgctagaaat gaatatcctg ctcaagtttt caacaatgaa aaccacaaac ttaacctcta
      361 tggagataac gttgaggtag attatcgtgg atatgaggta acagttgaaa atttcttacg
      421 ggttttgact gggcgtcatg agaatgctgt tccaaggtca aagcgtctcc tcagtgatga
      481 gggtagccat atactactgt acatgactgg gcatggaggt gatgaatttt tgaagtttca
      541 agatgcagaa gaactccaga gtcacgattt agcagatgct gtaaaacaaa tgaaagagaa
      601 gcgtagattc aaggagctga tgataatggt tgatacttgc caagctgcca ctctctttaa
      661 tcagcttcaa tctcctggtg ttttggctat tggtagcagt ctaaaaggag agaactcata
      721 ttcccatcac ctggattcag atattggtgt atctgttgta gatcggttta catattacac
      781 tcttgcattc tttgagaggc tcaatatata tgacaatgca tcacttaaca gtttatttag
      841 gtcctacgat ccgagactgc taatgtctac tgcctactac cggactgatc tttaccaacc
      901 acatctggtg gaggtaccgg tcacaaattt cttcggttca gttatggaga ccattcatac
      961 tgattcagct tacaaagctt tctcaagtaa aatctccgaa agaaagatca attctgagat
     1021 gccattcaat caactttccg aacacgatct taaagaagag cttgagaata caaacatacc
     1081 aaacgatgag ttgatagctg agaagcaaaa atgcccatat tcacaaatgc gggcagacct
     1141 ccacgagaaa gtggagaagc ttgaaaatgt cgatacagtg gttaacctca gcatagcagt
     1201 gatggtactc gctgtaatgg tctcatcatc tttactacga tgaagaactg atataatcat
     1261 ctgcacttca cttaatctat gtagtctgat tcactgttgc agcttcacac ccattttgta
     1321 attttttgca caatgctata aaaaaaaatc accaaaatca agaaaatatc aactctcatg
     1381 ctcgaacc
//
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