U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Transcription elongation factor (TFIIS) family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 828521, updated on 18-Sep-2024

    Summary

    Official Full Name
    Transcription elongation factor (TFIIS) family protein
    Primary source
    TAIR:AT4G24200
    Locus tag
    AT4G24200
    See related
    Araport:AT4G24200
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T22A6.30; T22A6_30
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Location:
    chromosome: 4
    Exon count:
    2
    Sequence:
    Chromosome: 4; NC_003075.7 (12556268..12560974, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene THAUMATIN-LIKE PROTEIN 1 Neighboring gene Chaperone protein htpG family protein Neighboring gene RING/U-box superfamily protein Neighboring gene F-box family protein

    General gene information

    NM_001341653.1
    NM_118553.6

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    located_in mitochondrion HDA PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
     

    General protein information

    Preferred Names
    Transcription elongation factor (TFIIS) family protein
    NP_194151.2
    • Transcription elongation factor (TFIIS) family protein; CONTAINS InterPro DOMAIN/s: Transcription factor IIS, N-terminal (InterPro:IPR017923); Has 1174 Blast hits to 562 proteins in 174 species: Archae - 0; Bacteria - 342; Metazoa - 163; Fungi - 176; Plants - 109; Viruses - 0; Other Eukaryotes - 384 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      12556268..12560974 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_118553.6NP_194151.2  Transcription elongation factor (TFIIS) family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_194151.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UTY5, Q8VZM2
      Conserved Domains (1) summary
      pfam08711
      Location:100148
      Med26; TFIIS helical bundle-like domain
    2. NM_001341653.1NP_001328278.1  Transcription elongation factor (TFIIS) family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UTY5, Q8VZM2
      Conserved Domains (1) summary
      pfam08711
      Location:100148
      Med26; TFIIS helical bundle-like domain