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    Glycosyl hydrolase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 823858, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Glycosyl hydrolase family protein
    Primary source
    TAIR:AT3G47050
    Locus tag
    AT3G47050
    See related
    Araport:AT3G47050
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    9
    Sequence:
    Chromosome: 3; NC_003074.8 (17327935..17330889, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene F-box and associated interaction domains-containing protein Neighboring gene Glycosyl hydrolase family protein Neighboring gene miscRNA Neighboring gene FTSH protease 7 Neighboring gene thylakoid soluble phosphoprotein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The vegetative vacuole proteome of Arabidopsis thaliana reveals predicted and unexpected proteins. Carter C, et al. Plant Cell, 2004 Dec. PMID 15539469, Free PMC Article
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001084785.2
    NM_114572.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plant-type vacuole HDA PubMed 

    General protein information

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    Preferred Names
    Glycosyl hydrolase family protein
    NP_001078254.2
    • Glycosyl hydrolase family protein; FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process; EXPRESSED IN: sperm cell, pollen tube; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 3, C-terminal (InterPro:IPR002772), Glycoside hydrolase, family 3, N-terminal (InterPro:IPR001764), Glycoside hydrolase, catalytic core (InterPro:IPR017853); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase family protein (TAIR:AT3G47000.1); Has 9264 Blast hits to 9259 proteins in 1571 species: Archae - 67; Bacteria - 5916; Metazoa - 13; Fungi - 1233; Plants - 446; Viruses - 0; Other Eukaryotes - 1589 (source: NCBI BLink).
    NP_190289.1
    • Glycosyl hydrolase family protein; FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: vacuole; EXPRESSED IN: sperm cell, pollen tube; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 3, N-terminal (InterPro:IPR001764), Glycoside hydrolase, family 3, C-terminal (InterPro:IPR002772), Glycoside hydrolase, catalytic core (InterPro:IPR017853); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase family protein (TAIR:AT3G47010.1); Has 10572 Blast hits to 9756 proteins in 1589 species: Archae - 69; Bacteria - 6515; Metazoa - 14; Fungi - 1565; Plants - 482; Viruses - 0; Other Eukaryotes - 1927 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      17327935..17330889 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_114572.3 → NP_190289.1  Glycosyl hydrolase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_190289.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654FDJ1, Q9SD68
      Conserved Domains (3) summary
      COG1472
      Location:28 → 462
      BglX; Periplasmic beta-glucosidase and related glycosidases [Carbohydrate transport and metabolism]
      pfam01915
      Location:394 → 581
      Glyco_hydro_3_C; Glycosyl hydrolase family 3 C-terminal domain
      cl07971
      Location:30 → 357
      Glyco_hydro_3; Glycosyl hydrolase family 3 N terminal domain

    2. NM_001084785.2 → NP_001078254.2  Glycosyl hydrolase family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4JAB9, Q0WRU1
    Nucleotide Protein
    Heading Accession and Version

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