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    LHCB4.1 light harvesting complex photosystem II [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 830325, updated on 18-Sep-2024

    Summary

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    Official Symbol
    LHCB4.1
    Official Full Name
    light harvesting complex photosystem II
    Primary source
    TAIR:AT5G01530
    Locus tag
    AT5G01530
    See related
    Araport:AT5G01530
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F7A7.50; F7A7_50; light harvesting complex photosystem II
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    Genomic context

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    See LHCB4.1 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    2
    Sequence:
    Chromosome: 5; NC_003076.8 (208866..210548)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene root UVB sensitive protein (Protein of unknown function, DUF647) Neighboring gene RING/U-box superfamily protein Neighboring gene lectin receptor kinase a4.1 Neighboring gene ncRNA Neighboring gene lectin receptor kinase a4.1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Architecture of a charge-transfer state regulating light harvesting in a plant antenna protein. Ahn TK, et al. Science, 2008 May 9. PMID 18467588
    2. Arabidopsis mutants deleted in the light-harvesting protein Lhcb4 have a disrupted photosystem II macrostructure and are defective in photoprotection. de Bianchi S, et al. Plant Cell, 2011 Jul. PMID 21803939, Free PMC Article
    3. Tocopherol cyclase (VTE1) localization and vitamin E accumulation in chloroplast plastoglobule lipoprotein particles. Vidi PA, et al. J Biol Chem, 2006 Apr 21. PMID 16414959
    4. A split-ubiquitin yeast two-hybrid screen to examine the substrate specificity of atToc159 and atToc132, two Arabidopsis chloroplast preprotein import receptors. Dutta S, et al. PLoS One, 2014. PMID 24736607, Free PMC Article
    5. VH1/BRL2 receptor-like kinase interacts with vascular-specific adaptor proteins VIT and VIK to influence leaf venation. Ceserani T, et al. Plant J, 2009 Mar. PMID 19000166, Free PMC Article

    See all (19) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_120231.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables chlorophyll binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    enables mRNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in photosynthesis, light harvesting IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast HDA PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in chloroplast thylakoid HDA PubMed 
    located_in chloroplast thylakoid membrane HDA PubMed 
    located_in plasma membrane HDA PubMed 
    located_in plastoglobule HDA PubMed 
    located_in thylakoid HDA PubMed 

    General protein information

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    Preferred Names
    light harvesting complex photosystem II
    NP_195773.1
    • light harvesting complex photosystem II (LHCB4.1); FUNCTIONS IN: chlorophyll binding; INVOLVED IN: response to blue light, response to red light, response to far red light, photosynthesis; LOCATED IN: in 6 components; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: light harvesting complex photosystem II (TAIR:AT3G08940.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      208866..210548
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_120231.4 → NP_195773.1  light harvesting complex photosystem II [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_195773.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q07473, Q8RWN1, Q94AD5, Q94K17
      UniProtKB/TrEMBL
      A0A178UQ51, A0A384LC70, A0A7G2F4T1, Q0WW97
      Conserved Domains (1) summary
      PLN00187
      Location:14 → 289
      PLN00187; photosystem II light-harvesting complex II protein Lhcb4; Provisional
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q07473.1

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