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Conserved domains on  [gi|15241005|ref|NP_195773|]
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light harvesting complex photosystem II [Arabidopsis thaliana]

Protein Classification

chlorophyll a-b binding domain-containing protein; chlorophyll a-b binding protein( domain architecture ID 10010699)

chlorophyll a-b binding domain-containing protein such as plant chlorophyll a-b binding proteins, which are components of the light-harvesting complex (LHC) that functions as a light receptor, capturing and delivering excitation energy to photosystems with which it is closely associated| chlorophyll a-b binding protein is a component of the light-harvesting complex (LHC) that functions as a light receptor; it captures and delivers excitation energy to photosystems with which it is closely associated

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
PLN00187 PLN00187
photosystem II light-harvesting complex II protein Lhcb4; Provisional
 14-289 0e+00

photosystem II light-harvesting complex II protein Lhcb4; Provisional


:

Pssm-ID: 177781  Cd Length: 286  Bit Score: 563.64  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15241005   14 IMGTRVaPGIHPGSGRFTAVFGFGKKKAAP--KKSAKKTVTTDRPLWYPGAISPDWLDGSLVGDYGFDPFGLGKPAEYLQ 91
Cdd:PLN00187  10 FMGTRV-PDVASNSGRIVARFGFGKKKKAAkkAKKKSSKVGADRPLWFPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQ 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15241005   92 FDIDSLDQNLAKNLAGDVIGTRTEAADAKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKV 171
Cdd:PLN00187  89 FDLDSLDQNLAKNLAGDVIGTRTEASEIKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALSVEALTGVTWQDAGKV 168

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15241005  172 ELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLAADPEKTAQLQLAEIKHARLAMV 251
Cdd:PLN00187 169 ELVDGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAADPEKKETLQLAEIKHARLAMV 248

                        250       260       270
                 ....*....|....*....|....*....|....*...
gi 15241005  252 AFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFSS 289
Cdd:PLN00187 249 AFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFSS 286
 
Name Accession Description Interval E-value
PLN00187 PLN00187
photosystem II light-harvesting complex II protein Lhcb4; Provisional
 14-289 0e+00

photosystem II light-harvesting complex II protein Lhcb4; Provisional


Pssm-ID: 177781  Cd Length: 286  Bit Score: 563.64  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15241005   14 IMGTRVaPGIHPGSGRFTAVFGFGKKKAAP--KKSAKKTVTTDRPLWYPGAISPDWLDGSLVGDYGFDPFGLGKPAEYLQ 91
Cdd:PLN00187  10 FMGTRV-PDVASNSGRIVARFGFGKKKKAAkkAKKKSSKVGADRPLWFPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQ 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15241005   92 FDIDSLDQNLAKNLAGDVIGTRTEAADAKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKV 171
Cdd:PLN00187  89 FDLDSLDQNLAKNLAGDVIGTRTEASEIKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALSVEALTGVTWQDAGKV 168

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15241005  172 ELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLAADPEKTAQLQLAEIKHARLAMV 251
Cdd:PLN00187 169 ELVDGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAADPEKKETLQLAEIKHARLAMV 248

                        250       260       270
                 ....*....|....*....|....*....|....*...
gi 15241005  252 AFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFSS 289
Cdd:PLN00187 249 AFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFSS 286
Chloroa_b-bind pfam00504
Chlorophyll A-B binding protein;
64-261 1.49e-49

Chlorophyll A-B binding protein;


Pssm-ID: 459836 [Multi-domain]  Cd Length: 159  Bit Score: 161.32  E-value: 1.49e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15241005    64 SPDWLDGSLVGDYGFDPFGLGKPAEylqfdidsldqnlaknlagdvigtrteaadakstpfqpysevfGIQRFRECELIH 143
Cdd:pfam00504   1 PPAYLDGSLPGDYGFDPLGLSADPE-------------------------------------------TFKRYREAELKH 37

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15241005   144 GRWAMLATLGALSVEWLTGVT------WQDAGKVELVdgssylgqplPFSISTLIW-IEVLVIGYIEFQRNAE------L 210
Cdd:pfam00504  38 GRWAMLAVLGALVPEALGKLGggnepvWFEAGAVALH----------AQSVPTLLAlQILLLMGFLELARWQGgkapglG 107

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|..
gi 15241005   211 DSEKRLYPGGKFFDPLGLAA-DPEKTAQLQLAEIKHARLAMVAFLGFAVQAA 261
Cdd:pfam00504 108 GGGDRGYPGGFGFDPLGLAKkDPETLAELKLKELKNGRLAMIAFLGFFVQEL 159
 
Name Accession Description Interval E-value
PLN00187 PLN00187
photosystem II light-harvesting complex II protein Lhcb4; Provisional
 14-289 0e+00

photosystem II light-harvesting complex II protein Lhcb4; Provisional


Pssm-ID: 177781  Cd Length: 286  Bit Score: 563.64  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15241005   14 IMGTRVaPGIHPGSGRFTAVFGFGKKKAAP--KKSAKKTVTTDRPLWYPGAISPDWLDGSLVGDYGFDPFGLGKPAEYLQ 91
Cdd:PLN00187  10 FMGTRV-PDVASNSGRIVARFGFGKKKKAAkkAKKKSSKVGADRPLWFPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQ 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15241005   92 FDIDSLDQNLAKNLAGDVIGTRTEAADAKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKV 171
Cdd:PLN00187  89 FDLDSLDQNLAKNLAGDVIGTRTEASEIKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALSVEALTGVTWQDAGKV 168

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15241005  172 ELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLAADPEKTAQLQLAEIKHARLAMV 251
Cdd:PLN00187 169 ELVDGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAADPEKKETLQLAEIKHARLAMV 248

                        250       260       270
                 ....*....|....*....|....*....|....*...
gi 15241005  252 AFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFSS 289
Cdd:PLN00187 249 AFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFSS 286
PLN00099 PLN00099
light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional
 58-285 1.26e-54

light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional


Pssm-ID: 177717  Cd Length: 243  Bit Score: 177.14  E-value: 1.26e-54
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15241005   58 WYPGAISPDWLDGSLVGDYGFDPFGLGKPAEYLQfdidsldqnlaknlagdvigtrteaadakstpfqpysevfgiqRFR 137
Cdd:PLN00099  47 WMPGQPRPPYLDGSAPGDFGFDPLRLGEVPENLE-------------------------------------------RYK 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15241005  138 ECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVDG--SSYLGQPLPF-SISTLIWIEVLVIGYIEFQRNAELDSEK 214
Cdd:PLN00099  84 ESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWAAIPGgqATYLGNPVPWgTLPTILAIEFLAIAFVEHQRSMEKDPEK 163

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 15241005  215 RLYPGGKFfDPLGLAADPEKTAQLQLAEIKHARLAMVAFLGFAVQAAA-TGKGPLNNWATHLSDPLHTTIID 285
Cdd:PLN00099 164 KKYPGGAF-DPLGYSKDPKKFEEYKVKEIKNGRLALLAFVGFCVQQSAyPGTGPLENLATHLADPWHNNIGD 234
Chloroa_b-bind pfam00504
Chlorophyll A-B binding protein;
64-261 1.49e-49

Chlorophyll A-B binding protein;


Pssm-ID: 459836 [Multi-domain]  Cd Length: 159  Bit Score: 161.32  E-value: 1.49e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15241005    64 SPDWLDGSLVGDYGFDPFGLGKPAEylqfdidsldqnlaknlagdvigtrteaadakstpfqpysevfGIQRFRECELIH 143
Cdd:pfam00504   1 PPAYLDGSLPGDYGFDPLGLSADPE-------------------------------------------TFKRYREAELKH 37

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15241005   144 GRWAMLATLGALSVEWLTGVT------WQDAGKVELVdgssylgqplPFSISTLIW-IEVLVIGYIEFQRNAE------L 210
Cdd:pfam00504  38 GRWAMLAVLGALVPEALGKLGggnepvWFEAGAVALH----------AQSVPTLLAlQILLLMGFLELARWQGgkapglG 107

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|..
gi 15241005   211 DSEKRLYPGGKFFDPLGLAA-DPEKTAQLQLAEIKHARLAMVAFLGFAVQAA 261
Cdd:pfam00504 108 GGGDRGYPGGFGFDPLGLAKkDPETLAELKLKELKNGRLAMIAFLGFFVQEL 159
PLN00147 PLN00147
light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional
 14-290 1.86e-47

light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional


Pssm-ID: 215076 [Multi-domain]  Cd Length: 252  Bit Score: 159.27  E-value: 1.86e-47
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15241005   14 IMGTRVAPGIHPGSGRFTAVFGFGKKKAAPKKSAKKTVTTDRPLWYPGAISPDWLDGSLVGDYGFDPFGLGKPAEYLQFd 93
Cdd:PLN00147   4 MAGGTTGGFLHQPRDSSSHCTRSISSVAASSGGINPVVAQERPTWLPGLDPPPHLDGTLAGDFGFDPLGLGEDPESLKW- 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15241005   94 idsldqnlaknlagdvigtrteaadakstpfqpysevfgiqrFRECELIHGRWAMLATLGALSVEWL--TGVT----WQD 167
Cdd:PLN00147  83 ------------------------------------------YVQAELVHSRFAMAGVAGILFTDLLrvTGIRnlpvWYE 120

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15241005  168 AGKVELVDGSSylgqplpfsiSTLIWIEVLVIGYIEFQR-------------------NAELDSEKRLYPGGKFFDPLGL 228
Cdd:PLN00147 121 AGAVKFEFAST----------RTLFVVQLLLMGFAETKRymdfvspgsqakegsffglEAALEGLEPGYPGGPLFNPLGL 190

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 15241005  229 AADPEKTAQLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFSSS 290
Cdd:PLN00147 191 AKDIENAHDWKLKEIKNGRLAMVAMLGFFVQASVTHTGPIDNLLTHLSDPWHKTIIQTLSHS 252
PLN00098 PLN00098
light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional
 54-289 1.11e-41

light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional


Pssm-ID: 177716  Cd Length: 267  Bit Score: 144.67  E-value: 1.11e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15241005   54 DRPLWYPGAISPDWLDGSLVGDYGFDPFGLGKPAEYLQFdidsldqnlaknlagdvigtrteaadakstpfqpysevfgi 133
Cdd:PLN00098  61 DRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPELLKW----------------------------------------- 99

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15241005  134 qrFRECELIHGRWAMLATLGALSVEWLTGV------TWQDAGKVElvdgssYLGQPlpfsiSTLIWIEVLVIGYIEFQRN 207
Cdd:PLN00098 100 --FAQAELMHSRWAMLAVAGILIPECLERLgfienfSWYDAGARE------YFADP-----TTLFVVQMVLMGWAEGRRW 166

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15241005  208 AEL------DSEKRL-----------YPGGKFFDPLGLA-ADPEKTAQLQLAEIKHARLAMVAFLGFAVQAAATGKGPLN 269
Cdd:PLN00098 167 ADLikpgcvDIEPKLpnktnpkpdvgYPGGLWFDPMMWGrGSPEPVMVLRTKEIKNGRLAMLAFVGFCFQAVYTGEGPIE 246

                        250       260
                 ....*....|....*....|
gi 15241005  270 NWATHLSDPLHTTIIDTFSS 289
Cdd:PLN00098 247 NLMAHLADPGHCNVFSAFTS 266
PLN00048 PLN00048
photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
 54-287 1.64e-38

photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional


Pssm-ID: 177680 [Multi-domain]  Cd Length: 262  Bit Score: 136.13  E-value: 1.64e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15241005   54 DRPLWYPGAISPDWLDGSLVGDYGFDPFGLGKPAEylqfdidsldqnlaknlAGDVIGTRteaadakstpFQPYSEVfgi 133
Cdd:PLN00048  41 DRQLWFASKQSLSYLDGTLPGDFGFDPLGLSDPEG-----------------AGGFIEPQ----------WLAYGEV--- 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15241005  134 qrfrecelIHGRWAMLATLGALSVEWL---------TGVTWQDAGKVELVDGSSYLGQPLpfsisTLIWIEVLVIGYIEF 204
Cdd:PLN00048  91 --------INGRFAMLGAAGAIAPEILgkaglipqeTALPWFQSGVIPPAGTYDYWADPY-----TLFVLEMALMGFAEH 157

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15241005  205 QRNAE------------LDSEKRL-------YPGGKFFDPLGLAADPEKTAQLQLAEIKHARLAMVAFLGFAVQAAATGK 265
Cdd:PLN00048 158 RRAQDyykpgsmgkqyfLGLEKGLggsgnpaYPGGPFFNPLGFGKDEKSMKELKLKEVKNGRLAMLAILGYFIQALVTGV 237

                        250       260
                 ....*....|....*....|..
gi 15241005  266 GPLNNWATHLSDPLHTTIIDTF 287
Cdd:PLN00048 238 GPFQNLLDHLADPVNNNVLTNL 259
PLN00025 PLN00025
photosystem II light harvesting chlorophyll a/b binding protein; Provisional
 54-278 1.66e-37

photosystem II light harvesting chlorophyll a/b binding protein; Provisional


Pssm-ID: 215033 [Multi-domain]  Cd Length: 262  Bit Score: 133.72  E-value: 1.66e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15241005   54 DRPLWYpGAIS---PDWLDGSLVGDYGFDPFGLgkpaeylqfdidsldqnlaknlagdvigtrteAADAkstpfqpysEV 130
Cdd:PLN00025  50 DRPKYL-GPFSgetPSYLTGEFPGDYGWDTAGL--------------------------------SADP---------ET 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15241005  131 FgiQRFRECELIHGRWAMLATLGALSVEWLT--GVT-----WQDAGKVELVDGS-SYLGQP-LPFSISTL-IW-IEVLVI 199
Cdd:PLN00025  88 F--ARNRELEVIHARWAMLGALGCVTPELLAknGVKfgeavWFKAGAQIFSEGGlDYLGNPsLVHAQSILaIWaCQVVLM 165

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15241005  200 GYIEFQRNAE------LDsekRLYPGGKFfDPLGLAADPEKTAQLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWAT 273
Cdd:PLN00025 166 GAVEGYRVNGgplgegLD---PLYPGGSF-DPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLAD 241


                 ....*
gi 15241005  274 HLSDP 278
Cdd:PLN00025 242 HLADP 246
PLN00097 PLN00097
photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional
 54-283 3.93e-36

photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional


Pssm-ID: 165670 [Multi-domain]  Cd Length: 244  Bit Score: 129.36  E-value: 3.93e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15241005   54 DRPLWYPGAISPDWLDGSLVGDYGFDPFGLGKPAEYLQFdidsldqnlaknlagdvigtrteaadakstpfqpysevfgi 133
Cdd:PLN00097  43 DRPTWLPGKAAAAHLDGSLPCDYGFDPLNLGADPEMLKW----------------------------------------- 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15241005  134 qrFRECELIHGRWAMLATLGALSVEWLTGV------TWQDAGKVelvDGSSYLGQPLPF-SISTLIWIEVL--------- 197
Cdd:PLN00097  82 --FVQAELMHARWAMLGLAGCVAPELLTKIgmadlpNWIDAAKW---DGYWAGAGPLFFiQMAMFNWAEIRrwqdmkapg 156

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15241005  198 ------VIGYIEFQRNAELDsekrlYPGGkFFDPLGLAADPEKTAQLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNW 271
Cdd:PLN00097 157 smnedpLFGANKGDTNTDVG-----YPKG-LFDKFGWAKDEKKAAELKLKEIANGRLAMLAFLGCCAQAIQTGTGPVDNL 230

                        250
                 ....*....|..
gi 15241005  272 ATHLSDPLHTTI 283
Cdd:PLN00097 231 FSHLADPGHNGI 242
PLN00101 PLN00101
Photosystem I light-harvesting complex type 4 protein; Provisional
 58-288 1.76e-35

Photosystem I light-harvesting complex type 4 protein; Provisional


Pssm-ID: 215055 [Multi-domain]  Cd Length: 250  Bit Score: 128.11  E-value: 1.76e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15241005   58 WYPGAISPDWLDGSLVGDYGFDPFGLGKPAEYLQFdidsldqnlaknlagdvigtrteaadakstpfqpysevfgiqrFR 137
Cdd:PLN00101  56 WLPGLASPGYLNGSLPGDNGFDPLGLAEDPENLKW-------------------------------------------FV 92

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15241005  138 ECELIHGRWAMLATLGALSVEWLTGV------TWQDAGKVELVDGSSylgqplpfsisTLIWIEVLVIGYIEFQR----- 206
Cdd:PLN00101  93 QAELVNGRWAMLGVAGMLLPEVFTKIgiinapQWYDAGKAEYFASSS-----------TLFVIEFILFHYVEIRRwqdik 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15241005  207 ------------NAELDSEKRLYPGGkFFDPLGLAADPEKTAQlqlaEIKHARLAMVAFLGFAVQAAATGKGPLNNWATH 274
Cdd:PLN00101 162 npgsvnqdpifkQYSLPPNEVGYPGG-IFNPLNFAPTEEAKEK----ELANGRLAMLAFLGFVVQHNVTGKGPFENLLQH 236

                        250
                 ....*....|....
gi 15241005  275 LSDPLHTTIIDTFS 288
Cdd:PLN00101 237 LSDPWHNTIVQTLS 250
PLN00100 PLN00100
light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional
 55-290 3.62e-35

light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional


Pssm-ID: 215054  Cd Length: 246  Bit Score: 126.91  E-value: 3.62e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15241005   55 RPLWYPGAISPDWLDGSLVGDYGFDPFGLGKPAEYLqfdidsldqnlaknlagdvigtrteaadakstpfqPYsevfgiq 134
Cdd:PLN00100  35 RPMWYPGATAPKYLDGTMAGDYGFDPLRLGANPETL-----------------------------------PY------- 72

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15241005  135 rFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELvdgssylgqplPFSISTLIWIEVLVIGYIEFQR-NAELDSE 213
Cdd:PLN00100  73 -LQEAELMNGRWAMAATAGILFTDAVGLPKFWEAGAEKY-----------GLDLQTLVLIQVVVMAVLEAARyRGFMKTG 140

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 15241005  214 KRLYPGGKFFDPLGLaadpeKTAQLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIidtFSSS 290
Cdd:PLN00100 141 ESGVLSFFPFDPTGM-----DSPEMKVKEVKNGRLAMLAFLGMVSQYAVTGKSPLEGLKAHMANPGHVNI---FTSS 209
PLN00171 PLN00171
photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional
 54-287 1.18e-34

photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional


Pssm-ID: 215088  Cd Length: 324  Bit Score: 127.61  E-value: 1.18e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15241005   54 DRPLWYpGAIS---PDWLDGSLVGDYGFDPFGLGK-PAEYlqfdidsldqnlaknlagdvigtrteaadakstpfqpyse 129
Cdd:PLN00171 107 ERPRWL-GPIPydyPDHLTGELPGDYGFDIAGLGKdPVAF---------------------------------------- 145

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15241005  130 vfgiQRFRECELIHGRWAMLATLGALSVEWL--TGV------TWQDAGKVELV-DGSSYLGQP-LPFSISTLIWI----E 195
Cdd:PLN00171 146 ----DKYFNFEILHARWAMLAALGVVIPEVLdlFGAvhfaepVWWRVGYAKLQgDTLDYLGIPgLHIAGSQGVIViaicQ 221

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15241005  196 VLVIGYIEFQRNAELDSEKRL---------YPGGKFFDPLGLAADPEKTAQLQLAEIKHARLAMVAFLGFAVQAAATGKG 266
Cdd:PLN00171 222 ALLMVGPEYARYCGIEALEPLgiylpgdinYPGGALFDPLGLSKDPVAFEDLKVKEIKNGRLAMVAWLGFYIQAAVTGKG 301

                        250       260
                 ....*....|....*....|.
gi 15241005  267 PLNNWATHLSDPLHTTIIDTF 287
Cdd:PLN00171 302 PVQNLVDHLSDPLHNNLLSSL 322
PLN00170 PLN00170
photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional
 58-268 1.06e-32

photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional


Pssm-ID: 215087 [Multi-domain]  Cd Length: 255  Bit Score: 120.81  E-value: 1.06e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15241005   58 WYPGA------ISPDWLDGSLVGDYGFDPFGLGKPAEYLQFdidsldqnlaknlagdvigtrteaadakstpfqpysevf 131
Cdd:PLN00170  54 WIPAVkgggnlVDPEWLDGSLPGDYGFDPLGLGKDPAFLKW--------------------------------------- 94

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15241005  132 giqrFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVElvdgssylGQPLPFSISTLIWIEVLVIGYIEFQR----- 206
Cdd:PLN00170  95 ----YREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAGADP--------GAIAPFSFGSLLGTQLLLMGWVESKRwvdff 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15241005  207 NAELDSEK------------------RLYPGGKFFDPLGLAA---------DPEKTAQLQLAEIKHARLAMVAFLGFAVQ 259
Cdd:PLN00170 163 NPDSQSVEwatpwsrtaenfanatglQGYPGGKFFDPLGLAGtvkdgvyipDFEKLERLKLAEIKHARLAMVAMLIFYFE 242


                 ....*....
gi 15241005  260 aAATGKGPL 268
Cdd:PLN00170 243 -AGQGKTPL 250
PLN00089 PLN00089
fucoxanthin-chlorophyll a/c binding protein; Provisional
 136-266 7.29e-13

fucoxanthin-chlorophyll a/c binding protein; Provisional


Pssm-ID: 177710 [Multi-domain]  Cd Length: 209  Bit Score: 66.24  E-value: 7.29e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15241005  136 FRECELIHGRWAMLATLGALSVEW--LTGVTWQDAGKVELVDGSSYLGQPLPFsISTLIWIEvLVIGYIEFQRNAELDSE 213
Cdd:PLN00089  75 FRESELKHGRAAMLAVAGFIAPDFvrIPGEAYSFAAIPKTIDAHDALLKSGAM-IQIFAWIG-FVDLAVSAPAAAAAAEF 152

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 15241005  214 KRLyPGGKFFDPLGLA-ADPEKTAQLQLAEIKHARLAMVAFLGFAVQAAATGKG 266
Cdd:PLN00089 153 DRT-PGDFGFDLLALYpKDAAKMEKKKDKELKNGRLAMVAIGGIATGSAITGHG 205
Chloroa_b-bind pfam00504
Chlorophyll A-B binding protein;
223-266 1.67e-11

Chlorophyll A-B binding protein;


Pssm-ID: 459836 [Multi-domain]  Cd Length: 159  Bit Score: 61.17  E-value: 1.67e-11
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 15241005   223 FDPLGLAADPEKTAQLQLAEIKHARLAMVAFLGFAVQAAATGKG 266
Cdd:pfam00504  15 FDPLGLSADPETFKRYREAELKHGRWAMLAVLGALVPEALGKLG 58
PLN00120 PLN00120
fucoxanthin-chlorophyll a-c binding protein; Provisional
 222-261 1.20e-07

fucoxanthin-chlorophyll a-c binding protein; Provisional


Pssm-ID: 215063  Cd Length: 202  Bit Score: 50.90  E-value: 1.20e-07
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|..
gi 15241005  222 FFDPLGLA--ADPEKTAQLQLAEIKHARLAMVAFLGFAVQAA 261
Cdd:PLN00120  46 FFDPLGLVddGDQEKFDRLRYVEIKHGRISMLAVVGYLVTEA 87
PLN00014 PLN00014
light-harvesting-like protein 3; Provisional
 133-224 1.93e-03

light-harvesting-like protein 3; Provisional


Pssm-ID: 177653 [Multi-domain]  Cd Length: 250  Bit Score: 39.07  E-value: 1.93e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15241005  133 IQRFR--ECELIHGRWAMLATLGALSVEWLTGvtwqdagkVELVD-GSSYLGQPLPFsistliwieVLVIGYIEFQRNAE 209
Cdd:PLN00014 154 VKRFHlpEAELLNGRAAMVGFFMAYLVDSLTG--------VGLVDqMGNFFCKTLLF---------VTVAGVLLIRKNED 216

                         90
                 ....*....|....*
gi 15241005  210 LDSEKRLYPGGKFFD 224
Cdd:PLN00014 217 LDTLKKLADEATFYD 231
PLN00120 PLN00120
fucoxanthin-chlorophyll a-c binding protein; Provisional
 135-258 8.10e-03

fucoxanthin-chlorophyll a-c binding protein; Provisional


Pssm-ID: 215063  Cd Length: 202  Bit Score: 36.64  E-value: 8.10e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15241005  135 RFRECELIHGRWAMLATLGALSVEwlTGVTWqdAGKVELvDGSSYLGQP----LPFSISTLIWIEVLV-IGYIE--FQRN 207
Cdd:PLN00120  63 RLRYVEIKHGRISMLAVVGYLVTE--AGIRL--PGDIDY-SGTSFSDIPngfaALDAIPTAGLLQILAfIGFLElaVMKD 137

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 15241005  208 AELDSEkrlYPG---GKFFDPLGLAADPEKTAQLQLAEIKHARLAMVAFLGFAV 258
Cdd:PLN00120 138 ITGEGE---FVGdfrNGYIDFGWDSFDEETKLKKRAIELNQGRAAQMGILALMV 188
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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