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    DUF8 agenet domain protein (DOMAIN OF UNKNOWN FUNCTION 724 8) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 832442, updated on 18-Sep-2024

    Summary

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    Official Symbol
    DUF8
    Official Full Name
    agenet domain protein (DOMAIN OF UNKNOWN FUNCTION 724 8)
    Primary source
    TAIR:AT5G23770
    Locus tag
    AT5G23770
    See related
    Araport:AT5G23770
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATDUF8; DOMAIN OF UNKNOWN FUNCTION 724 8; MRO11.19; MRO11_19
    Summary
    Member of the plant-specific DUF724 protein family. Arabidopsis has 10 DUF724 proteins. Loss of function mutant has a WT phenotype
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    Genomic context

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    See DUF8 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    5
    Sequence:
    Chromosome: 5; NC_003076.8 (8014320..8016913, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene ribosomal protein S11-beta Neighboring gene Remorin family protein Neighboring gene Copper transport protein family Neighboring gene agenet domain protein (DOMAIN OF UNKNOWN FUNCTION 724 9) Neighboring gene galactinol synthase 5

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Characterization of DUF724 gene family in Arabidopsis thaliana. Cao X, et al. Plant Mol Biol, 2010 Jan. PMID 19795213
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001203443.1
    NM_001343823.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    agenet domain protein (DOMAIN OF UNKNOWN FUNCTION 724 8)
    NP_001190372.1
    • DOMAIN OF UNKNOWN FUNCTION 724 8 (DUF8); FUNCTIONS IN: RNA binding; LOCATED IN: nucleus; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Tudor-like, plant (InterPro:IPR014002), Agenet (InterPro:IPR008395), Protein of unknown function DUF724 (InterPro:IPR007930); BEST Arabidopsis thaliana protein match is: DOMAIN OF UNKNOWN FUNCTION 724 10 (TAIR:AT5G23800.1).
    NP_001318629.1
    • DOMAIN OF UNKNOWN FUNCTION 724 8 (DUF8); FUNCTIONS IN: RNA binding; LOCATED IN: nucleus; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Agenet (InterPro:IPR008395), Tudor-like, plant (InterPro:IPR014002), Protein of unknown function DUF724 (InterPro:IPR007930); BEST Arabidopsis thaliana protein match is: DOMAIN OF UNKNOWN FUNCTION 724 9 (TAIR:AT5G23780.1); Has 177 Blast hits to 150 proteins in 26 species: Archae - 2; Bacteria - 7; Metazoa - 1; Fungi - 4; Plants - 146; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      8014320..8016913 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001343823.1 → NP_001318629.1  agenet domain protein (DOMAIN OF UNKNOWN FUNCTION 724 8) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4KEA4, Q9FFA3
      UniProtKB/TrEMBL
      A0A2H1ZE63

    2. NM_001203443.1 → NP_001190372.1  agenet domain protein (DOMAIN OF UNKNOWN FUNCTION 724 8) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190372.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654G3L7, F4KEA3
      Conserved Domains (5) summary
      smart00743
      Location:78 → 132
      Agenet; Tudor-like domain present in plant sequences
      pfam02060
      Location:397 → 495
      ISK_Channel; Slow voltage-gated potassium channel
      pfam05266
      Location:403 → 576
      DUF724; Protein of unknown function (DUF724)
      pfam05641
      Location:162 → 228
      Agenet; Agenet domain
      cl22958
      Location:228 → 292
      Agenet; Agenet domain
    Nucleotide Protein
    Heading Accession and Version

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