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Conserved domains on  [gi|334187878|ref|NP_001190372|]
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agenet domain protein (DOMAIN OF UNKNOWN FUNCTION 724 8) [Arabidopsis thaliana]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF724 pfam05266
Protein of unknown function (DUF724); This family contains several uncharacterized proteins ...
 403-577 6.92e-84

Protein of unknown function (DUF724); This family contains several uncharacterized proteins found in Arabidopsis thaliana and other plants. This region is often found associated with Agenet domains and may contain coiled-coil.


:

Pssm-ID: 428400 [Multi-domain]  Cd Length: 188  Bit Score: 259.51  E-value: 6.92e-84
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334187878  403 VLPFEKKLRIWETLESMEVFKTVPQSPHFSPLLvESREDSREMSAVGMMLTFFGLLDEVKALQHNDPISFFISLTNSFAE 482
Cdd:pfam05266   1 VLPFVKKSPLWKTIESMEVFKKVPQRPHFSPLL-ESKEELREGSALGMMVSFAGLLEKVKKLQVDDSRSVFESLMESFAE 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334187878  483 LEKHGFNVKAPQSRINKLLSLRDRQSKKTEELKDAEKVTAEKESVK-------AENKRKILELQRL-------NEEMDKE 548
Cdd:pfam05266  80 LEKHGFDVKAPQSRINKLLSLKDRQTKLLEELKKLEKKIAEEESEKrkleeeiDELEKKILELERQlalakekKEAADKE 159

                         170       180
                  ....*....|....*....|....*....
gi 334187878  549 IAQSKSCAAKIVQQLDDVKLEFLATASAP 577
Cdd:pfam05266 160 IARLKSEAEKLEQEIQDVELEFEATASAP 188
Tudor_Agenet_AtDUF_rpt1_3 cd20405
first and third Tudor-like Agenet domains found in a family of Arabidopsis thaliana DUF724 ...
 159-224 1.95e-16

first and third Tudor-like Agenet domains found in a family of Arabidopsis thaliana DUF724 domain-containing proteins (AtDUFs); The family includes a group of AtDUFs (AtDUF1-3 and AtDUF6-8) that may be involved in the polar growth of plant cells via transportation of RNAs. Members of this family have four Tudor-like Agenet domains, except for AtDUF8, which contains only two copies of the Tudor-like Agenet domain. AtDUF4 and AtDUF5 are not included here due to the lack of a Tudor-like Agenet domain. The model corresponds to the first and third Tudor-like Agenet domains in AtDUF1-3 and AtDUF6-7, as well as the first Tudor-like Agenet domain in AtDUF8. The Tudor domain binds to proteins with dimethylated arginine or lysine residues, and may also bind methylated histone tails to facilitate protein-protein interactions.


:

Pssm-ID: 410476  Cd Length: 65  Bit Score: 73.83  E-value: 1.95e-16
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 334187878 159 FSPGTMVEVSSKINEGEVVWVPSMVIKEFKedDEYKYIVKDKSFSCEGKKARPNKTVDLSSLRPIP 224
Cdd:cd20405    1 FSKGTEVEVSSEEEGFRGSWYRAIVVKEPE--GEKKFLVKYDELLLDDGSEPLEETVDLRRVRPVP 64
Tudor_Agenet_AtDUF_rpt2_4 cd20406
second and fourth Tudor-like Agenet domains found in the family of Arabidopsis thaliana DUF724 ...
 232-286 1.16e-10

second and fourth Tudor-like Agenet domains found in the family of Arabidopsis thaliana DUF724 domain-containing proteins (AtDUFs); The family includes a group of AtDUFs (AtDUF1-3 and AtDUF6-8) that may be involved in the polar growth of plant cells via transportation of RNAs. Members of this family have four Tudor-like Agenet domains, except for AtDUF8, which contains only two copies of the Tudor-like Agenet domain. AtDUF4 and AtDUF5 are not included here due to the lack of a Tudor-like Agenet domain. The model corresponds to the second and fourth Tudor-like Agenet domains in AtDUF1-3 and AtDUF6-7, as well as the first Tudor-like Agenet domain in AtDUF8. The Tudor domain binds to proteins with dimethylated arginine or lysine residues, and may also bind methylated histone tails to facilitate protein-protein interactions.


:

Pssm-ID: 410477  Cd Length: 47  Bit Score: 56.83  E-value: 1.16e-10
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 334187878 232 LEENVEVFLDGmGWRHGRVmgsqeraIGTLSQKWYFVRLESTKKQLTFKQSDLRP 286
Cdd:cd20406    1 LGDKVDAFYNG-GWWPGVV-------TKVLEDNRYLVYLDATKEELEFEHSDLRP 47
Agenet smart00743
Tudor-like domain present in plant sequences; Domain in plant sequences with possible ...
 78-132 3.64e-08

Tudor-like domain present in plant sequences; Domain in plant sequences with possible chromatin-associated functions.


:

Pssm-ID: 214798  Cd Length: 59  Bit Score: 50.01  E-value: 3.64e-08
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 334187878    78 IKIGSIVEADYKDAWVTGFVVKEIDVGKCLVCFD--SIPDVILFERKLLRPHLQWLD 132
Cdd:smart00743   3 FKEGDRVEVFSEDSWWEAVVTKVLGDGKYLVEYKgeSEPLELTVDWSDLRPHPPWVD 59
 
Name Accession Description Interval E-value
DUF724 pfam05266
Protein of unknown function (DUF724); This family contains several uncharacterized proteins ...
 403-577 6.92e-84

Protein of unknown function (DUF724); This family contains several uncharacterized proteins found in Arabidopsis thaliana and other plants. This region is often found associated with Agenet domains and may contain coiled-coil.


Pssm-ID: 428400 [Multi-domain]  Cd Length: 188  Bit Score: 259.51  E-value: 6.92e-84
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334187878  403 VLPFEKKLRIWETLESMEVFKTVPQSPHFSPLLvESREDSREMSAVGMMLTFFGLLDEVKALQHNDPISFFISLTNSFAE 482
Cdd:pfam05266   1 VLPFVKKSPLWKTIESMEVFKKVPQRPHFSPLL-ESKEELREGSALGMMVSFAGLLEKVKKLQVDDSRSVFESLMESFAE 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334187878  483 LEKHGFNVKAPQSRINKLLSLRDRQSKKTEELKDAEKVTAEKESVK-------AENKRKILELQRL-------NEEMDKE 548
Cdd:pfam05266  80 LEKHGFDVKAPQSRINKLLSLKDRQTKLLEELKKLEKKIAEEESEKrkleeeiDELEKKILELERQlalakekKEAADKE 159

                         170       180
                  ....*....|....*....|....*....
gi 334187878  549 IAQSKSCAAKIVQQLDDVKLEFLATASAP 577
Cdd:pfam05266 160 IARLKSEAEKLEQEIQDVELEFEATASAP 188
Tudor_Agenet_AtDUF_rpt1_3 cd20405
first and third Tudor-like Agenet domains found in a family of Arabidopsis thaliana DUF724 ...
 159-224 1.95e-16

first and third Tudor-like Agenet domains found in a family of Arabidopsis thaliana DUF724 domain-containing proteins (AtDUFs); The family includes a group of AtDUFs (AtDUF1-3 and AtDUF6-8) that may be involved in the polar growth of plant cells via transportation of RNAs. Members of this family have four Tudor-like Agenet domains, except for AtDUF8, which contains only two copies of the Tudor-like Agenet domain. AtDUF4 and AtDUF5 are not included here due to the lack of a Tudor-like Agenet domain. The model corresponds to the first and third Tudor-like Agenet domains in AtDUF1-3 and AtDUF6-7, as well as the first Tudor-like Agenet domain in AtDUF8. The Tudor domain binds to proteins with dimethylated arginine or lysine residues, and may also bind methylated histone tails to facilitate protein-protein interactions.


Pssm-ID: 410476  Cd Length: 65  Bit Score: 73.83  E-value: 1.95e-16
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 334187878 159 FSPGTMVEVSSKINEGEVVWVPSMVIKEFKedDEYKYIVKDKSFSCEGKKARPNKTVDLSSLRPIP 224
Cdd:cd20405    1 FSKGTEVEVSSEEEGFRGSWYRAIVVKEPE--GEKKFLVKYDELLLDDGSEPLEETVDLRRVRPVP 64
Agenet pfam05641
Agenet domain; This domain is related to the TUDOR domain pfam00567. The function of the ...
 162-224 4.17e-11

Agenet domain; This domain is related to the TUDOR domain pfam00567. The function of the agenet domain is unknown. This family now matches both the two Agenet domains in the FMR proteins.


Pssm-ID: 461700  Cd Length: 61  Bit Score: 58.48  E-value: 4.17e-11
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 334187878  162 GTMVEVSSKINEGEVVWVPSMVIKEFKEDdeyKYIVKDKSFSCEGKKARPNKTVDLSSLRPIP 224
Cdd:pfam05641   1 GDKVEVLSDEEGFRGAWFRAKVIKVLKGD---KYLVEYDDLLDEDGGGPLEEWVPASDIRPCP 60
Tudor_Agenet_AtDUF_rpt2_4 cd20406
second and fourth Tudor-like Agenet domains found in the family of Arabidopsis thaliana DUF724 ...
 232-286 1.16e-10

second and fourth Tudor-like Agenet domains found in the family of Arabidopsis thaliana DUF724 domain-containing proteins (AtDUFs); The family includes a group of AtDUFs (AtDUF1-3 and AtDUF6-8) that may be involved in the polar growth of plant cells via transportation of RNAs. Members of this family have four Tudor-like Agenet domains, except for AtDUF8, which contains only two copies of the Tudor-like Agenet domain. AtDUF4 and AtDUF5 are not included here due to the lack of a Tudor-like Agenet domain. The model corresponds to the second and fourth Tudor-like Agenet domains in AtDUF1-3 and AtDUF6-7, as well as the first Tudor-like Agenet domain in AtDUF8. The Tudor domain binds to proteins with dimethylated arginine or lysine residues, and may also bind methylated histone tails to facilitate protein-protein interactions.


Pssm-ID: 410477  Cd Length: 47  Bit Score: 56.83  E-value: 1.16e-10
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 334187878 232 LEENVEVFLDGmGWRHGRVmgsqeraIGTLSQKWYFVRLESTKKQLTFKQSDLRP 286
Cdd:cd20406    1 LGDKVDAFYNG-GWWPGVV-------TKVLEDNRYLVYLDATKEELEFEHSDLRP 47
Agenet smart00743
Tudor-like domain present in plant sequences; Domain in plant sequences with possible ...
 78-132 3.64e-08

Tudor-like domain present in plant sequences; Domain in plant sequences with possible chromatin-associated functions.


Pssm-ID: 214798  Cd Length: 59  Bit Score: 50.01  E-value: 3.64e-08
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 334187878    78 IKIGSIVEADYKDAWVTGFVVKEIDVGKCLVCFD--SIPDVILFERKLLRPHLQWLD 132
Cdd:smart00743   3 FKEGDRVEVFSEDSWWEAVVTKVLGDGKYLVEYKgeSEPLELTVDWSDLRPHPPWVD 59
Agenet smart00743
Tudor-like domain present in plant sequences; Domain in plant sequences with possible ...
 157-228 2.02e-07

Tudor-like domain present in plant sequences; Domain in plant sequences with possible chromatin-associated functions.


Pssm-ID: 214798  Cd Length: 59  Bit Score: 48.09  E-value: 2.02e-07
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 334187878   157 PMFSPGTMVEVSSkinegEVVWVPSMVIKEfkeDDEYKYIVKDKSFScegkkARPNKTVDLSSLRPIPVSVD 228
Cdd:smart00743   1 SDFKEGDRVEVFS-----EDSWWEAVVTKV---LGDGKYLVEYKGES-----EPLELTVDWSDLRPHPPWVD 59
Tudor_Agenet_AtDUF_rpt2_4 cd20406
second and fourth Tudor-like Agenet domains found in the family of Arabidopsis thaliana DUF724 ...
 80-126 4.61e-07

second and fourth Tudor-like Agenet domains found in the family of Arabidopsis thaliana DUF724 domain-containing proteins (AtDUFs); The family includes a group of AtDUFs (AtDUF1-3 and AtDUF6-8) that may be involved in the polar growth of plant cells via transportation of RNAs. Members of this family have four Tudor-like Agenet domains, except for AtDUF8, which contains only two copies of the Tudor-like Agenet domain. AtDUF4 and AtDUF5 are not included here due to the lack of a Tudor-like Agenet domain. The model corresponds to the second and fourth Tudor-like Agenet domains in AtDUF1-3 and AtDUF6-7, as well as the first Tudor-like Agenet domain in AtDUF8. The Tudor domain binds to proteins with dimethylated arginine or lysine residues, and may also bind methylated histone tails to facilitate protein-protein interactions.


Pssm-ID: 410477  Cd Length: 47  Bit Score: 46.43  E-value: 4.61e-07
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*..
gi 334187878  80 IGSIVEADYKDAWVTGFVVKEIDVGKCLVCFDSIPDVILFERKLLRP 126
Cdd:cd20406    1 LGDKVDAFYNGGWWPGVVTKVLEDNRYLVYLDATKEELEFEHSDLRP 47
Agenet smart00743
Tudor-like domain present in plant sequences; Domain in plant sequences with possible ...
 228-292 9.26e-03

Tudor-like domain present in plant sequences; Domain in plant sequences with possible chromatin-associated functions.


Pssm-ID: 214798  Cd Length: 59  Bit Score: 34.99  E-value: 9.26e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 334187878   228 DEYQLEENVEVFLDGmGWRHGRVmgsqeraIGTLSQKWYFVRL--ESTKKQLTFKQSDLRPLKVWED 292
Cdd:smart00743   1 SDFKEGDRVEVFSED-SWWEAVV-------TKVLGDGKYLVEYkgESEPLELTVDWSDLRPHPPWVD 59
 
Name Accession Description Interval E-value
DUF724 pfam05266
Protein of unknown function (DUF724); This family contains several uncharacterized proteins ...
 403-577 6.92e-84

Protein of unknown function (DUF724); This family contains several uncharacterized proteins found in Arabidopsis thaliana and other plants. This region is often found associated with Agenet domains and may contain coiled-coil.


Pssm-ID: 428400 [Multi-domain]  Cd Length: 188  Bit Score: 259.51  E-value: 6.92e-84
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334187878  403 VLPFEKKLRIWETLESMEVFKTVPQSPHFSPLLvESREDSREMSAVGMMLTFFGLLDEVKALQHNDPISFFISLTNSFAE 482
Cdd:pfam05266   1 VLPFVKKSPLWKTIESMEVFKKVPQRPHFSPLL-ESKEELREGSALGMMVSFAGLLEKVKKLQVDDSRSVFESLMESFAE 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334187878  483 LEKHGFNVKAPQSRINKLLSLRDRQSKKTEELKDAEKVTAEKESVK-------AENKRKILELQRL-------NEEMDKE 548
Cdd:pfam05266  80 LEKHGFDVKAPQSRINKLLSLKDRQTKLLEELKKLEKKIAEEESEKrkleeeiDELEKKILELERQlalakekKEAADKE 159

                         170       180
                  ....*....|....*....|....*....
gi 334187878  549 IAQSKSCAAKIVQQLDDVKLEFLATASAP 577
Cdd:pfam05266 160 IARLKSEAEKLEQEIQDVELEFEATASAP 188
Tudor_Agenet_AtDUF_rpt1_3 cd20405
first and third Tudor-like Agenet domains found in a family of Arabidopsis thaliana DUF724 ...
 159-224 1.95e-16

first and third Tudor-like Agenet domains found in a family of Arabidopsis thaliana DUF724 domain-containing proteins (AtDUFs); The family includes a group of AtDUFs (AtDUF1-3 and AtDUF6-8) that may be involved in the polar growth of plant cells via transportation of RNAs. Members of this family have four Tudor-like Agenet domains, except for AtDUF8, which contains only two copies of the Tudor-like Agenet domain. AtDUF4 and AtDUF5 are not included here due to the lack of a Tudor-like Agenet domain. The model corresponds to the first and third Tudor-like Agenet domains in AtDUF1-3 and AtDUF6-7, as well as the first Tudor-like Agenet domain in AtDUF8. The Tudor domain binds to proteins with dimethylated arginine or lysine residues, and may also bind methylated histone tails to facilitate protein-protein interactions.


Pssm-ID: 410476  Cd Length: 65  Bit Score: 73.83  E-value: 1.95e-16
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 334187878 159 FSPGTMVEVSSKINEGEVVWVPSMVIKEFKedDEYKYIVKDKSFSCEGKKARPNKTVDLSSLRPIP 224
Cdd:cd20405    1 FSKGTEVEVSSEEEGFRGSWYRAIVVKEPE--GEKKFLVKYDELLLDDGSEPLEETVDLRRVRPVP 64
Agenet pfam05641
Agenet domain; This domain is related to the TUDOR domain pfam00567. The function of the ...
 162-224 4.17e-11

Agenet domain; This domain is related to the TUDOR domain pfam00567. The function of the agenet domain is unknown. This family now matches both the two Agenet domains in the FMR proteins.


Pssm-ID: 461700  Cd Length: 61  Bit Score: 58.48  E-value: 4.17e-11
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 334187878  162 GTMVEVSSKINEGEVVWVPSMVIKEFKEDdeyKYIVKDKSFSCEGKKARPNKTVDLSSLRPIP 224
Cdd:pfam05641   1 GDKVEVLSDEEGFRGAWFRAKVIKVLKGD---KYLVEYDDLLDEDGGGPLEEWVPASDIRPCP 60
Tudor_Agenet_AtDUF_rpt2_4 cd20406
second and fourth Tudor-like Agenet domains found in the family of Arabidopsis thaliana DUF724 ...
 232-286 1.16e-10

second and fourth Tudor-like Agenet domains found in the family of Arabidopsis thaliana DUF724 domain-containing proteins (AtDUFs); The family includes a group of AtDUFs (AtDUF1-3 and AtDUF6-8) that may be involved in the polar growth of plant cells via transportation of RNAs. Members of this family have four Tudor-like Agenet domains, except for AtDUF8, which contains only two copies of the Tudor-like Agenet domain. AtDUF4 and AtDUF5 are not included here due to the lack of a Tudor-like Agenet domain. The model corresponds to the second and fourth Tudor-like Agenet domains in AtDUF1-3 and AtDUF6-7, as well as the first Tudor-like Agenet domain in AtDUF8. The Tudor domain binds to proteins with dimethylated arginine or lysine residues, and may also bind methylated histone tails to facilitate protein-protein interactions.


Pssm-ID: 410477  Cd Length: 47  Bit Score: 56.83  E-value: 1.16e-10
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 334187878 232 LEENVEVFLDGmGWRHGRVmgsqeraIGTLSQKWYFVRLESTKKQLTFKQSDLRP 286
Cdd:cd20406    1 LGDKVDAFYNG-GWWPGVV-------TKVLEDNRYLVYLDATKEELEFEHSDLRP 47
Agenet smart00743
Tudor-like domain present in plant sequences; Domain in plant sequences with possible ...
 78-132 3.64e-08

Tudor-like domain present in plant sequences; Domain in plant sequences with possible chromatin-associated functions.


Pssm-ID: 214798  Cd Length: 59  Bit Score: 50.01  E-value: 3.64e-08
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 334187878    78 IKIGSIVEADYKDAWVTGFVVKEIDVGKCLVCFD--SIPDVILFERKLLRPHLQWLD 132
Cdd:smart00743   3 FKEGDRVEVFSEDSWWEAVVTKVLGDGKYLVEYKgeSEPLELTVDWSDLRPHPPWVD 59
Agenet smart00743
Tudor-like domain present in plant sequences; Domain in plant sequences with possible ...
 157-228 2.02e-07

Tudor-like domain present in plant sequences; Domain in plant sequences with possible chromatin-associated functions.


Pssm-ID: 214798  Cd Length: 59  Bit Score: 48.09  E-value: 2.02e-07
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 334187878   157 PMFSPGTMVEVSSkinegEVVWVPSMVIKEfkeDDEYKYIVKDKSFScegkkARPNKTVDLSSLRPIPVSVD 228
Cdd:smart00743   1 SDFKEGDRVEVFS-----EDSWWEAVVTKV---LGDGKYLVEYKGES-----EPLELTVDWSDLRPHPPWVD 59
Tudor_Agenet_AtDUF_rpt2_4 cd20406
second and fourth Tudor-like Agenet domains found in the family of Arabidopsis thaliana DUF724 ...
 80-126 4.61e-07

second and fourth Tudor-like Agenet domains found in the family of Arabidopsis thaliana DUF724 domain-containing proteins (AtDUFs); The family includes a group of AtDUFs (AtDUF1-3 and AtDUF6-8) that may be involved in the polar growth of plant cells via transportation of RNAs. Members of this family have four Tudor-like Agenet domains, except for AtDUF8, which contains only two copies of the Tudor-like Agenet domain. AtDUF4 and AtDUF5 are not included here due to the lack of a Tudor-like Agenet domain. The model corresponds to the second and fourth Tudor-like Agenet domains in AtDUF1-3 and AtDUF6-7, as well as the first Tudor-like Agenet domain in AtDUF8. The Tudor domain binds to proteins with dimethylated arginine or lysine residues, and may also bind methylated histone tails to facilitate protein-protein interactions.


Pssm-ID: 410477  Cd Length: 47  Bit Score: 46.43  E-value: 4.61e-07
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*..
gi 334187878  80 IGSIVEADYKDAWVTGFVVKEIDVGKCLVCFDSIPDVILFERKLLRP 126
Cdd:cd20406    1 LGDKVDAFYNGGWWPGVVTKVLEDNRYLVYLDATKEELEFEHSDLRP 47
Agenet smart00743
Tudor-like domain present in plant sequences; Domain in plant sequences with possible ...
 228-292 9.26e-03

Tudor-like domain present in plant sequences; Domain in plant sequences with possible chromatin-associated functions.


Pssm-ID: 214798  Cd Length: 59  Bit Score: 34.99  E-value: 9.26e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 334187878   228 DEYQLEENVEVFLDGmGWRHGRVmgsqeraIGTLSQKWYFVRL--ESTKKQLTFKQSDLRPLKVWED 292
Cdd:smart00743   1 SDFKEGDRVEVFSED-SWWEAVV-------TKVLGDGKYLVEYkgESEPLELTVDWSDLRPHPPWVD 59
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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