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    RNF138P1 ring finger protein 138 pseudogene 1 [ Homo sapiens (human) ]

    Gene ID: 379013, updated on 10-Dec-2024

    Summary

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    Official Symbol
    RNF138P1provided by HGNC
    Official Full Name
    ring finger protein 138 pseudogene 1provided by HGNC
    Primary source
    HGNC:HGNC:30342
    See related
    AllianceGenome:HGNC:30342
    Gene type
    pseudo
    RefSeq status
    PROVISIONAL
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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    Genomic context

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    See RNF138P1 in Genome Data Viewer
    Location:
    5q11.2
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (55528842..55534542, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (56356428..56362133, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (54824670..54830370, complement)

    Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene Mtr4 exosome RNA helicase Neighboring gene uncharacterized LOC124900977 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16015 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:54733965-54734792 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:54737283-54737821 Neighboring gene phospholipid phosphatase 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:54797624-54798166 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:54798167-54798709 Neighboring gene microRNA 5687 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16016 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22555 Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:54870447-54871333 Neighboring gene adenylate kinase 4 pseudogene 2 Neighboring gene uncharacterized LOC124900980 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr5:54899656-54900855

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    General gene information

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    Markers

    Other Names

    • ring finger protein 138, E3 ubiquitin protein ligase pseudogene 1

    Clone Names

    • FLJ42210

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_001575.1 RNA Sequence

      Status: PROVISIONAL

      Source sequence(s)
      AC025777

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

      Range
      55528842..55534542 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060929.1 Alternate T2T-CHM13v2.0

      Range
      56356428..56362133 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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