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    GATA4 GATA binding protein 4 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 696775, updated on 17-Aug-2024

    Summary

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    Official Symbol
    GATA4provided by VGNC
    Official Full Name
    GATA binding protein 4provided by VGNC
    Primary source
    VGNC:VGNC:72890
    See related
    Ensembl:ENSMMUG00000019208
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See GATA4 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 8 NC_041761.1 (8816830..8901476, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 8 NC_027900.1 (7973764..8059201, complement)

    Chromosome 8 - NC_041761.1Genomic Context describing neighboring genes Neighboring gene nei like DNA glycosylase 2 Neighboring gene long intergenic non-protein coding RNA 2905 Neighboring gene uncharacterized LOC114680174 Neighboring gene BLK proto-oncogene, Src family tyrosine kinase

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell fate commitment IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription factor GATA-4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041761.1 Reference Mmul_10 Primary Assembly

      Range
      8816830..8901476 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015144749.2 → XP_015000235.2  transcription factor GATA-4 isoform X1

      UniProtKB/TrEMBL
      F6QQ97, F6QQA8
      Related
      ENSMMUP00000025244.4, ENSMMUT00000026983.4
      Conserved Domains (2) summary
      cd00202
      Location:271 → 322
      ZnF_GATA; Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C
      pfam05349
      Location:1 → 205
      GATA-N; GATA-type transcription activator, N-terminal

    2. XM_028852327.1 → XP_028708160.1  transcription factor GATA-4 isoform X1

      UniProtKB/TrEMBL
      F6QQ97, F6QQA8
      Conserved Domains (2) summary
      cd00202
      Location:271 → 322
      ZnF_GATA; Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C
      pfam05349
      Location:1 → 205
      GATA-N; GATA-type transcription activator, N-terminal

    3. XM_015144750.2 → XP_015000236.2  transcription factor GATA-4 isoform X2

      UniProtKB/TrEMBL
      F6QQA8
      Related
      ENSMMUP00000025243.4, ENSMMUT00000026982.4
      Conserved Domains (2) summary
      cd00202
      Location:270 → 321
      ZnF_GATA; Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C
      pfam05349
      Location:1 → 205
      GATA-N; GATA-type transcription activator, N-terminal

    4. XM_001087008.4 → XP_001087008.3  transcription factor GATA-4 isoform X1

      UniProtKB/TrEMBL
      F6QQ97, F6QQA8
      Conserved Domains (2) summary
      cd00202
      Location:271 → 322
      ZnF_GATA; Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C
      pfam05349
      Location:1 → 205
      GATA-N; GATA-type transcription activator, N-terminal
    Nucleotide Protein
    Heading Accession and Version

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