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    RRN3 RRN3 homolog, RNA polymerase I transcription factor [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 713500, updated on 5-Mar-2024

    Summary

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    Gene symbol
    RRN3
    Gene description
    RRN3 homolog, RNA polymerase I transcription factor
    Locus tag
    EGK_12528
    See related
    Ensembl:ENSMMUG00000002991
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See RRN3 in Genome Data Viewer
    Location:
    chromosome: 20
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 20 NC_041773.1 (14769998..14808447)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 20 NC_027912.1 (14963101..15001505)

    Chromosome 20 - NC_041773.1Genomic Context describing neighboring genes Neighboring gene dnaJ homolog subfamily C member 17 pseudogene Neighboring gene uncharacterized LOC106994966 Neighboring gene N-terminal asparagine amidase Neighboring gene pyridoxal dependent decarboxylase domain containing 1 Neighboring gene mpv17-like protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Yan G, et al. Nat Biotechnol, 2011 Oct 16. PMID 22002653
    2. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA polymerase I core binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase I general transcription initiation factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in transcription initiation at RNA polymerase I promoter IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    RNA polymerase I-specific transcription initiation factor RRN3
    Names
    RRN3 RNA polymerase I transcription factor homolog
    Transcription initiation factor IA

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001257664.1 → NP_001244593.1  RNA polymerase I-specific transcription initiation factor RRN3

      See identical proteins and their annotated locations for NP_001244593.1

      Status: PROVISIONAL

      Source sequence(s)
      JU335104
      UniProtKB/TrEMBL
      A0A1D5Q4Z4, A0A8J8XWN2, F7GVV6, G7NPQ0, H9FW48
      Related
      ENSMMUP00000043109.2, ENSMMUT00000075369.2
      Conserved Domains (1) summary
      pfam05327
      Location:60 → 585
      RRN3; RNA polymerase I specific transcription initiation factor RRN3

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041773.1 Reference Mmul_10 Primary Assembly

      Range
      14769998..14808447
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028840571.1 → XP_028696404.1  RNA polymerase I-specific transcription initiation factor RRN3 isoform X1

      UniProtKB/TrEMBL
      F7GVV6
      Conserved Domains (1) summary
      pfam05327
      Location:64 → 569
      RRN3; RNA polymerase I specific transcription initiation factor RRN3
    Nucleotide Protein
    Heading Accession and Version

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