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    C27B7.7 Ig-like and fibronectin type-III domain-containing protein C27B7.7 [ Caenorhabditis elegans ]

    Gene ID: 177708, updated on 9-Dec-2024

    Summary

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    Official Symbol
    C27B7.7
    Official Full Name
    Ig-like and fibronectin type-III domain-containing protein C27B7.7
    Primary source
    WormBase:WBGene00007764
    Locus tag
    CELE_C27B7.7
    See related
    AllianceGenome:WB:WBGene00007764
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to be involved in system development. Predicted to be located in extracellular region. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See C27B7.7 in Genome Data Viewer
    Location:
    chromosome: IV
    Exon count:
    28
    Sequence:
    Chromosome: IV; NC_003282.8 (8907043..8915452)

    Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene Helicase ARIP4;Helicase ATP-binding domain-containing protein Neighboring gene CCHC-type domain-containing protein Neighboring gene Putative serine/threonine-protein phosphatase C27B7.6 Neighboring gene ncRNA Neighboring gene INSulin related Neighboring gene Ras-related protein Rap-1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003282.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. C30F12.4 influences oogenesis, fat metabolism, and lifespan in C. elegans. Wang L, et al. Protein Cell, 2016 Oct. PMID 27638466, Free PMC Article
    2. EPIC: software toolkit for elution profile-based inference of protein complexes. Hu LZ, et al. Nat Methods, 2019 Aug. PMID 31308550, Free PMC Article
    3. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Process Evidence Code Pubs
    involved_in system development IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    Ig-like and fibronectin type-III domain-containing protein C27B7.7
    NP_001255352.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003282.8 Reference assembly

      Range
      8907043..8915452
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001268423.3 → NP_001255352.1  Ig-like and fibronectin type-III domain-containing protein C27B7.7 [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001255352.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q18245
      Conserved Domains (3) summary
      cd00096
      Location:873 → 946
      Ig; Immunoglobulin domain
      cd00063
      Location:530 → 628
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam07679
      Location:440 → 525
      I-set; Immunoglobulin I-set domain

    RNA

    1. NR_056330.1 RNA Sequence

      Status: REVIEWED

    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q18245.2

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