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    med28 mediator complex subunit 28 [ Danio rerio (zebrafish) ]

    Gene ID: 493610, updated on 9-Dec-2024

    Summary

    Official Symbol
    med28provided by ZNC
    Official Full Name
    mediator complex subunit 28provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-041121-4
    See related
    Ensembl:ENSDARG00000037410 AllianceGenome:ZFIN:ZDB-GENE-041121-4
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    wu:fc74b11; zgc:103633
    Summary
    Predicted to be located in nucleus. Predicted to be part of mediator complex. Orthologous to human MED28 (mediator complex subunit 28). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    NEW
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    Genomic context

    See med28 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 1 NC_007112.7 (21309396..21312596)
    105 previous assembly GRCz10 (GCF_000002035.5) 1 NC_007112.6 (20616459..20619659)

    Chromosome 1 - NC_007112.7Genomic Context describing neighboring genes Neighboring gene Rap guanine nucleotide exchange factor 2a Neighboring gene uncharacterized LOC137490656 Neighboring gene neuropeptide Y receptor Y1 Neighboring gene transmembrane protein 144a Neighboring gene glutamate receptor, ionotropic, AMPA 2a

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    General gene information

    Markers

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    part_of mediator complex IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    mediator of RNA polymerase II transcription subunit 28

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001007770.1NP_001007771.1  mediator of RNA polymerase II transcription subunit 28

      See identical proteins and their annotated locations for NP_001007771.1

      Status: PROVISIONAL

      Source sequence(s)
      BC085569
      UniProtKB/Swiss-Prot
      Q5RKN3
      UniProtKB/TrEMBL
      B2GR18
      Related
      ENSDARP00000054441.5, ENSDART00000054442.6
      Conserved Domains (1) summary
      pfam11594
      Location:73166
      Med28; Mediator complex subunit 28

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007112.7 Reference GRCz11 Primary Assembly

      Range
      21309396..21312596
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018394477.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      184082..187488
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCz11 ALT_DRER_TU_2

    Genomic

    1. NW_018395211.1 Reference GRCz11 ALT_DRER_TU_2

      Range
      276087..279287
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCz11 ALT_DRER_TU_3

    Genomic

    1. NW_018395372.1 Reference GRCz11 ALT_DRER_TU_3

      Range
      185031..188465
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)