NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|56090172|ref|NP_001007771|]
View 

mediator of RNA polymerase II transcription subunit 28 [Danio rerio]

Protein Classification

Med28 domain-containing protein( domain architecture ID 10569076)

Med28 domain-containing protein

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

Name Accession Description Interval E-value
Med28 pfam11594
Mediator complex subunit 28; Mediator is a large complex of up to 33 proteins that is ...
44-144 2.26e-48

Mediator complex subunit 28; Mediator is a large complex of up to 33 proteins that is conserved from plants to fungi to humans - the number and representation of individual subunits varying with species. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Subunit Med28 of the Mediator may function as a scaffolding protein within Mediator by maintaining the stability of a submodule within the head module, and components of this submodule act together in a gene-regulatory programme to suppress smooth muscle cell differentiation. Thus, mammalian Mediator subunit Med28 functions as a repressor of smooth muscle-cell differentiation, which could have implications for disorders associated with abnormalities in smooth muscle cell growth and differentiation, including atherosclerosis, asthma, hypertension, and smooth muscle tumours.


:

Pssm-ID: 463302  Cd Length: 101  Bit Score: 152.42  E-value: 2.26e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56090172    44 TLVDELEASFEACFASLVSQDYVNGTDQEEIRTGVDQCIQKFLDVARQTECFFLQKRLQLSVQKPEQVEKEDASELKNEL 123
Cdd:pfam11594   1 NLVDELEAAFQNCLPSLTSQDAVNRSDQDEIKTDVEQHIQKFLEAARQLEAFFLQKRLLLSAQKPEEVLKEEIAELRAEL 80
                          90       100
                  ....*....|....*....|.
gi 56090172   124 QRKEMLIQKHLAKIHHWQQVL 144
Cdd:pfam11594  81 ERKDELIKKHKEKIQEWQSVL 101
 
Name Accession Description Interval E-value
Med28 pfam11594
Mediator complex subunit 28; Mediator is a large complex of up to 33 proteins that is ...
44-144 2.26e-48

Mediator complex subunit 28; Mediator is a large complex of up to 33 proteins that is conserved from plants to fungi to humans - the number and representation of individual subunits varying with species. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Subunit Med28 of the Mediator may function as a scaffolding protein within Mediator by maintaining the stability of a submodule within the head module, and components of this submodule act together in a gene-regulatory programme to suppress smooth muscle cell differentiation. Thus, mammalian Mediator subunit Med28 functions as a repressor of smooth muscle-cell differentiation, which could have implications for disorders associated with abnormalities in smooth muscle cell growth and differentiation, including atherosclerosis, asthma, hypertension, and smooth muscle tumours.


Pssm-ID: 463302  Cd Length: 101  Bit Score: 152.42  E-value: 2.26e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56090172    44 TLVDELEASFEACFASLVSQDYVNGTDQEEIRTGVDQCIQKFLDVARQTECFFLQKRLQLSVQKPEQVEKEDASELKNEL 123
Cdd:pfam11594   1 NLVDELEAAFQNCLPSLTSQDAVNRSDQDEIKTDVEQHIQKFLEAARQLEAFFLQKRLLLSAQKPEEVLKEEIAELRAEL 80
                          90       100
                  ....*....|....*....|.
gi 56090172   124 QRKEMLIQKHLAKIHHWQQVL 144
Cdd:pfam11594  81 ERKDELIKKHKEKIQEWQSVL 101
 
Name Accession Description Interval E-value
Med28 pfam11594
Mediator complex subunit 28; Mediator is a large complex of up to 33 proteins that is ...
44-144 2.26e-48

Mediator complex subunit 28; Mediator is a large complex of up to 33 proteins that is conserved from plants to fungi to humans - the number and representation of individual subunits varying with species. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Subunit Med28 of the Mediator may function as a scaffolding protein within Mediator by maintaining the stability of a submodule within the head module, and components of this submodule act together in a gene-regulatory programme to suppress smooth muscle cell differentiation. Thus, mammalian Mediator subunit Med28 functions as a repressor of smooth muscle-cell differentiation, which could have implications for disorders associated with abnormalities in smooth muscle cell growth and differentiation, including atherosclerosis, asthma, hypertension, and smooth muscle tumours.


Pssm-ID: 463302  Cd Length: 101  Bit Score: 152.42  E-value: 2.26e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56090172    44 TLVDELEASFEACFASLVSQDYVNGTDQEEIRTGVDQCIQKFLDVARQTECFFLQKRLQLSVQKPEQVEKEDASELKNEL 123
Cdd:pfam11594   1 NLVDELEAAFQNCLPSLTSQDAVNRSDQDEIKTDVEQHIQKFLEAARQLEAFFLQKRLLLSAQKPEEVLKEEIAELRAEL 80
                          90       100
                  ....*....|....*....|.
gi 56090172   124 QRKEMLIQKHLAKIHHWQQVL 144
Cdd:pfam11594  81 ERKDELIKKHKEKIQEWQSVL 101
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH