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    Krtap10-10l2 keratin associated protein 10-10 like 2 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 690415, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Krtap10-10l2provided by RGD
    Official Full Name
    keratin associated protein 10-10 like 2provided by RGD
    Primary source
    RGD:1596091
    See related
    EnsemblRapid:ENSRNOG00000069553 AllianceGenome:RGD:1596091
    Gene type
    protein coding
    RefSeq status
    PREDICTED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to be located in cytosol and keratin filament. [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Muscle (RPKM 1.2), Spleen (RPKM 0.6) and 7 other tissues See more
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    Genomic context

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    See Krtap10-10l2 in Genome Data Viewer
    Location:
    20p12
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 20 NC_086038.1 (10844725..10845876)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 20 NC_051355.1 (10845110..10846261)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 20 NC_005119.4 (11561438..11562589)

    Chromosome 20 - NC_086038.1Genomic Context describing neighboring genes Neighboring gene thrombospondin-type laminin G domain and EAR repeats Neighboring gene keratin-associated protein 10-1-like Neighboring gene keratin-associated protein 10-11-like Neighboring gene keratin associated protein 10-10 Neighboring gene keratin associated protein 10-8

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in keratin filament IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein LOC690415

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001109590.1 → NP_001103060.1  uncharacterized protein LOC690415

      See identical proteins and their annotated locations for NP_001103060.1

      Status: PREDICTED

      Source sequence(s)
      CH473988
      UniProtKB/TrEMBL
      A0A8I6APD8, A6JK67
      Related
      ENSRNOP00000096464.1, ENSRNOT00000102721.2
      Conserved Domains (1) summary
      pfam13885
      Location:23 → 63
      Keratin_B2_2; Keratin, high sulfur B2 protein

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086038.1 Reference GRCr8

      Range
      10844725..10845876
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008772833.1 → XP_008771055.1  uncharacterized protein LOC690415 isoform X2

      Conserved Domains (1) summary
      pfam13885
      Location:23 → 63
      Keratin_B2_2; Keratin, high sulfur B2 protein

    2. XM_063279530.1 → XP_063135600.1  uncharacterized protein LOC690415 isoform X1

    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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    Research Materials