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    RERE arginine-glutamic acid dipeptide repeats [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 708902, updated on 17-Aug-2024

    Summary

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    Official Symbol
    REREprovided by VGNC
    Official Full Name
    arginine-glutamic acid dipeptide repeatsprovided by VGNC
    Primary source
    VGNC:VGNC:76897
    See related
    Ensembl:ENSMMUG00000021399
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See RERE in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    30
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 1 NC_041754.1 (215694901..216163615)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 1 NC_027893.1 (7964983..7965451, complement) , (7505427..7836782, complement)

    Chromosome 1 - NC_041754.1Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene enolase 1 Neighboring gene 60S ribosomal protein L7 pseudogene Neighboring gene 60S ribosomal protein L7 pseudogene Neighboring gene small nucleolar RNA SNORA77 Neighboring gene uncharacterized LOC106999854 Neighboring gene uncharacterized LOC106999872 Neighboring gene U6 spliceosomal RNA Neighboring gene solute carrier family 45 member 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables chromatin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transcription corepressor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    arginine-glutamic acid dipeptide repeats protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001265662.2 → NP_001252591.1  arginine-glutamic acid dipeptide repeats protein

      See identical proteins and their annotated locations for NP_001252591.1

      Status: PROVISIONAL

      Source sequence(s)
      JV635464
      UniProtKB/TrEMBL
      F7GDT6, I2CV19
      Related
      ENSMMUP00000040633.3, ENSMMUT00000047610.3
      Conserved Domains (5) summary
      cd11661
      Location:395 → 440
      SANT_MTA3_like; Myb-Like Dna-Binding Domain of MTA3 and related proteins
      smart00401
      Location:503 → 552
      ZnF_GATA; zinc finger binding to DNA consensus sequence [AT]GATA[AG]
      cd04709
      Location:102 → 307
      BAH_MTA; BAH, or Bromo Adjacent Homology domain, as present in MTA1 and similar proteins. The Metastasis-associated protein MTA1 is part of the NURD (nucleosome remodeling and deacetylating) complex and plays a role in cellular transformation and metastasis. BAH ...
      pfam01448
      Location:286 → 336
      ELM2; ELM2 domain
      pfam03154
      Location:568 → 1565
      Atrophin-1; Atrophin-1 family

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041754.1 Reference Mmul_10 Primary Assembly

      Range
      215694901..216163615
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028843497.1 → XP_028699330.1  arginine-glutamic acid dipeptide repeats protein isoform X1

      UniProtKB/TrEMBL
      F7GDT6, I2CV19
      Conserved Domains (5) summary
      cd11661
      Location:395 → 440
      SANT_MTA3_like; Myb-Like Dna-Binding Domain of MTA3 and related proteins
      smart00401
      Location:503 → 552
      ZnF_GATA; zinc finger binding to DNA consensus sequence [AT]GATA[AG]
      cd04709
      Location:102 → 307
      BAH_MTA; BAH, or Bromo Adjacent Homology domain, as present in MTA1 and similar proteins. The Metastasis-associated protein MTA1 is part of the NURD (nucleosome remodeling and deacetylating) complex and plays a role in cellular transformation and metastasis. BAH ...
      pfam01448
      Location:286 → 336
      ELM2; ELM2 domain
      pfam03154
      Location:568 → 1565
      Atrophin-1; Atrophin-1 family

    2. XM_028843500.1 → XP_028699333.1  arginine-glutamic acid dipeptide repeats protein isoform X2

      Conserved Domains (5) summary
      cd11661
      Location:353 → 398
      SANT_MTA3_like; Myb-Like Dna-Binding Domain of MTA3 and related proteins
      smart00401
      Location:461 → 510
      ZnF_GATA; zinc finger binding to DNA consensus sequence [AT]GATA[AG]
      cd04709
      Location:102 → 265
      BAH_MTA; BAH, or Bromo Adjacent Homology domain, as present in MTA1 and similar proteins. The Metastasis-associated protein MTA1 is part of the NURD (nucleosome remodeling and deacetylating) complex and plays a role in cellular transformation and metastasis. BAH ...
      pfam01448
      Location:244 → 294
      ELM2; ELM2 domain
      pfam03154
      Location:526 → 1523
      Atrophin-1; Atrophin-1 family

    3. XM_028843495.1 → XP_028699328.1  arginine-glutamic acid dipeptide repeats protein isoform X1

      UniProtKB/TrEMBL
      F7GDT6, I2CV19
      Conserved Domains (5) summary
      cd11661
      Location:395 → 440
      SANT_MTA3_like; Myb-Like Dna-Binding Domain of MTA3 and related proteins
      smart00401
      Location:503 → 552
      ZnF_GATA; zinc finger binding to DNA consensus sequence [AT]GATA[AG]
      cd04709
      Location:102 → 307
      BAH_MTA; BAH, or Bromo Adjacent Homology domain, as present in MTA1 and similar proteins. The Metastasis-associated protein MTA1 is part of the NURD (nucleosome remodeling and deacetylating) complex and plays a role in cellular transformation and metastasis. BAH ...
      pfam01448
      Location:286 → 336
      ELM2; ELM2 domain
      pfam03154
      Location:568 → 1565
      Atrophin-1; Atrophin-1 family

    4. XM_028843504.1 → XP_028699337.1  arginine-glutamic acid dipeptide repeats protein isoform X4

      Conserved Domains (4) summary
      cd11661
      Location:127 → 172
      SANT_MTA3_like; Myb-Like Dna-Binding Domain of MTA3 and related proteins
      smart00401
      Location:235 → 284
      ZnF_GATA; zinc finger binding to DNA consensus sequence [AT]GATA[AG]
      pfam01448
      Location:18 → 68
      ELM2; ELM2 domain
      pfam03154
      Location:300 → 1297
      Atrophin-1; Atrophin-1 family

    5. XM_028843508.1 → XP_028699341.1  arginine-glutamic acid dipeptide repeats protein isoform X3

      Conserved Domains (1) summary
      pfam03154
      Location:14 → 1011
      Atrophin-1; Atrophin-1 family

    6. XM_028843505.1 → XP_028699338.1  arginine-glutamic acid dipeptide repeats protein isoform X5

      Conserved Domains (3) summary
      cd11661
      Location:36 → 75
      SANT_MTA3_like; Myb-Like Dna-Binding Domain of MTA3 and related proteins
      smart00401
      Location:138 → 187
      ZnF_GATA; zinc finger binding to DNA consensus sequence [AT]GATA[AG]
      pfam03154
      Location:203 → 1200
      Atrophin-1; Atrophin-1 family

    7. XM_028843515.1 → XP_028699348.1  arginine-glutamic acid dipeptide repeats protein isoform X3

      Conserved Domains (1) summary
      pfam03154
      Location:14 → 1011
      Atrophin-1; Atrophin-1 family

    8. XM_028843503.1 → XP_028699336.1  arginine-glutamic acid dipeptide repeats protein isoform X3

      Conserved Domains (1) summary
      pfam03154
      Location:14 → 1011
      Atrophin-1; Atrophin-1 family

    9. XM_028843510.1 → XP_028699343.1  arginine-glutamic acid dipeptide repeats protein isoform X3

      Conserved Domains (1) summary
      pfam03154
      Location:14 → 1011
      Atrophin-1; Atrophin-1 family
    Nucleotide Protein
    Heading Accession and Version

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