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LOC9655176 cleavage stimulation factor subunit 50 [ Selaginella moellendorffii ]

Gene ID: 9655176, updated on 22-Oct-2023

Summary

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Gene symbol
LOC9655176
Gene description
cleavage stimulation factor subunit 50
Locus tag
SELMODRAFT_141637
Gene type
protein coding
RefSeq status
MODEL
Organism
Selaginella moellendorffii
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Lycopodiopsida; Selaginellales; Selaginellaceae; Selaginella
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Genomic context

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See LOC9655176 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
15
Annotation release Status Assembly Chr Location
100 current v1.0 (GCF_000143415.4) Unplaced Scaffold NW_003314264.1 (1769276..1771769, complement)

NW_003314264.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC9655174 Neighboring gene keratin, type I cytoskeletal 9-like Neighboring gene carnosine N-methyltransferase Neighboring gene uncharacterized LOC9655177 Neighboring gene nuclear speckle RNA-binding protein A Neighboring gene ATP-dependent Clp protease proteolytic subunit 5, chloroplastic

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_003314264 Unplaced Scaffold Reference v1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA 3'-end processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of mRNA cleavage stimulating factor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cleavage stimulation factor subunit 50

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Selaginella moellendorffii Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference v1.0

Genomic

  1. NW_003314264.1 Reference v1.0

    Range
    1769276..1771769 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002963601.2 → XP_002963647.1  cleavage stimulation factor subunit 50

    See identical proteins and their annotated locations for XP_002963647.1

    UniProtKB/TrEMBL
    D8QXZ6
    Conserved Domains (3) summary
    COG2319
    Location:118 → 428
    WD40; WD40 repeat [General function prediction only]
    cd00200
    Location:118 → 429
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:130 → 177
    7WD40; WD40 repeat [structural motif]
Nucleotide Protein
Heading Accession and Version

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