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TIR toll/interleukin-1 receptor-like protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 843624, updated on 18-Sep-2024

Summary

Official Symbol
TIR
Official Full Name
toll/interleukin-1 receptor-like protein
Primary source
TAIR:AT1G72930
Locus tag
AT1G72930
See related
Araport:AT1G72930
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
AtTN10; F3N23.13; F3N23_13; TIR-nucleotide binding site family 10; TN10; toll/interleukin-1 receptor-like
Summary
Toll/interleukin-1 receptor-like protein (TIR) mRNA
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Genomic context

See TIR in Genome Data Viewer
Location:
chromosome: 1
Exon count:
2
Sequence:
Chromosome: 1; NC_003070.9 (27439240..27440464)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene Toll-Interleukin-Resistance (TIR) domain family protein Neighboring gene ncRNA Neighboring gene Toll-Interleukin-Resistance (TIR) domain-containing protein

Interactions

General gene information

NM_001084347.1
NM_105951.3

Gene Ontology Provided by TAIR

Component Evidence Code Pubs
located_in chloroplast  
located_in cytoplasm PubMed 
located_in cytoplasm  
located_in mitochondrion PubMed 
located_in nucleus PubMed 
located_in plasmodesma PubMed 

General protein information

Preferred Names
toll/interleukin-1 receptor-like protein
NP_001077816.1
  • toll/interleukin-1 receptor-like (TIR); FUNCTIONS IN: transmembrane receptor activity; INVOLVED IN: signal transduction, defense response, innate immune response; LOCATED IN: intrinsic to membrane; CONTAINS InterPro DOMAIN/s: Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: Toll-Interleukin-Resistance (TIR) domain-containing protein (TAIR:AT1G72910.1); Has 1753 Blast hits to 1671 proteins in 89 species: Archae - 0; Bacteria - 95; Metazoa - 0; Fungi - 0; Plants - 1658; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
NP_177436.1
  • toll/interleukin-1 receptor-like (TIR); FUNCTIONS IN: transmembrane receptor activity; INVOLVED IN: signal transduction, defense response, innate immune response; LOCATED IN: intrinsic to membrane; CONTAINS InterPro DOMAIN/s: Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: Toll-Interleukin-Resistance (TIR) domain-containing protein (TAIR:AT1G72910.1); Has 1768 Blast hits to 1683 proteins in 89 species: Archae - 0; Bacteria - 94; Metazoa - 0; Fungi - 0; Plants - 1674; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    27439240..27440464
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_105951.3 → NP_177436.1  toll/interleukin-1 receptor-like protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_177436.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    A8MRJ7, B9DHJ4, Q9SE46, Q9SSN3
    UniProtKB/TrEMBL
    A0A178W3W1
    Conserved Domains (1) summary
    pfam01582
    Location:9 → 171
    TIR; TIR domain
  2. NM_001084347.1 → NP_001077816.1  toll/interleukin-1 receptor-like protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001077816.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178W4H9
    Conserved Domains (1) summary
    pfam01582
    Location:9 → 151
    TIR; TIR domain
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