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TCP family transcription factor [ Arabidopsis thaliana (thale cress) ]

Gene ID: 843532, updated on 18-Sep-2024

Summary

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Official Full Name
TCP family transcription factor
Primary source
TAIR:AT1G72010
Locus tag
AT1G72010
See related
Araport:AT1G72010
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
AtTCP22; F28P5.10; F28P5_10; TCP domain protein 22; TCP22
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Genomic context

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Location:
chromosome: 1
Exon count:
1
Sequence:
Chromosome: 1; NC_003070.9 (27107558..27109275)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene fucosyltransferase 13 Neighboring gene Plant neutral invertase family protein Neighboring gene TonB-dependent heme receptor A Neighboring gene Acyl-CoA N-acyltransferases (NAT) superfamily protein Neighboring gene P-loop containing nucleoside triphosphate hydrolases superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The Arabidopsis immune adaptor SRFR1 interacts with TCP transcription factors that redundantly contribute to effector-triggered immunity. Kim SH, et al. Plant J, 2014 Jun. PMID 24689742
  2. Class I TCP-DELLA interactions in inflorescence shoot apex determine plant height. Davière JM, et al. Curr Biol, 2014 Aug 18. PMID 25127215
  3. Regulation of leaf maturation by chromatin-mediated modulation of cytokinin responses. Efroni I, et al. Dev Cell, 2013 Feb 25. PMID 23449474, Free PMC Article
  4. Mapping the signaling network of BIN2 kinase using TurboID-mediated biotin labeling and phosphoproteomics. Kim TW, et al. Plant Cell, 2023 Mar 15. PMID 36660928, Free PMC Article
  5. MAPK target networks in Arabidopsis thaliana revealed using functional protein microarrays. Popescu SC, et al. Genes Dev, 2009 Jan 1. PMID 19095804, Free PMC Article

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_105859.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables DNA-binding transcription factor activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within regulation of DNA-templated transcription TAS
Traceable Author Statement
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
TCP family transcription factor
NP_177346.1
  • TCP family transcription factor; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Transcription factor, TCP (InterPro:IPR005333), Transcription factor TCP subgroup (InterPro:IPR017887); BEST Arabidopsis thaliana protein match is: TCP family transcription factor (TAIR:AT1G35560.1); Has 492 Blast hits to 490 proteins in 74 species: Archae - 0; Bacteria - 8; Metazoa - 7; Fungi - 7; Plants - 465; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    27107558..27109275
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_105859.5 → NP_177346.1  TCP family transcription factor [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_177346.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9C7G4
    UniProtKB/TrEMBL
    A0A178W3Z1, A0A654EYY4
    Conserved Domains (1) summary
    pfam03634
    Location:62 → 188
    TCP; TCP family transcription factor
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9C7G4.1

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