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NOSIC domain protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 843376, updated on 18-Sep-2024

Summary

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Official Full Name
NOSIC domain protein
Primary source
TAIR:AT1G70400
Locus tag
AT1G70400
See related
Araport:AT1G70400
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F17O7.6; F17O7_6
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Genomic context

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Location:
chromosome: 1
Exon count:
6
Sequence:
Chromosome: 1; NC_003070.9 (26531399..26533460, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene F-box and associated interaction domains-containing protein Neighboring gene F-box and associated interaction domains-containing protein Neighboring gene beta carbonic anhydrase 4 Neighboring gene DNA ligase-like protein, putative (DUF1645)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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NM_001036183.1
NM_001160991.1
NM_105708.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in spliceosomal tri-snRNP complex assembly IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of U4/U6 x U5 tri-snRNP complex IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
NOSIC domain protein
NP_001031260.1
  • CONTAINS InterPro DOMAIN/s: NOSIC (InterPro:IPR012976); BEST Arabidopsis thaliana protein match is: pre-mRNA processing ribonucleoprotein binding region-containing protein (TAIR:AT1G60170.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
NP_001154463.1
  • FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: egg cell; CONTAINS InterPro DOMAIN/s: NOSIC (InterPro:IPR012976); BEST Arabidopsis thaliana protein match is: pre-mRNA processing ribonucleoprotein binding region-containing protein (TAIR:AT1G60170.1); Has 484 Blast hits to 484 proteins in 190 species: Archae - 0; Bacteria - 0; Metazoa - 149; Fungi - 134; Plants - 124; Viruses - 0; Other Eukaryotes - 77 (source: NCBI BLink).
NP_177197.2
  • CONTAINS InterPro DOMAIN/s: NOSIC (InterPro:IPR012976); BEST Arabidopsis thaliana protein match is: pre-mRNA processing ribonucleoprotein binding region-containing protein (TAIR:AT1G60170.1); Has 479 Blast hits to 479 proteins in 178 species: Archae - 0; Bacteria - 0; Metazoa - 125; Fungi - 138; Plants - 124; Viruses - 0; Other Eukaryotes - 92 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    26531399..26533460 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001160991.1 → NP_001154463.1  NOSIC domain protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001154463.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    F4I5F1
    Conserved Domains (1) summary
    pfam01798
    Location:55 → 156
    Nop; snoRNA binding domain, fibrillarin

  2. NM_001036183.1 → NP_001031260.1  NOSIC domain protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001031260.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9WRH0, Q5XVG8
    Conserved Domains (1) summary
    smart00931
    Location:48 → 99
    NOSIC; NOSIC (NUC001) domain

  3. NM_105708.2 → NP_177197.2  NOSIC domain protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_177197.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    O64596, Q5XVG7
    Conserved Domains (1) summary
    smart00931
    Location:48 → 99
    NOSIC; NOSIC (NUC001) domain
Nucleotide Protein
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