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Ubiquitin carboxyl-terminal hydrolase-related protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 842819, updated on 18-Sep-2024

Summary

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Official Full Name
Ubiquitin carboxyl-terminal hydrolase-related protein
Primary source
TAIR:AT1G65120
Locus tag
AT1G65120
See related
Araport:AT1G65120
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T23K8.3; T23K8_3
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Genomic context

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Location:
chromosome: 1
Exon count:
12
Sequence:
Chromosome: 1; NC_003070.9 (24191179..24196337, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Ubiquitin carboxyl-terminal hydrolase-related protein Neighboring gene SCR-like 2 Neighboring gene ncRNA Neighboring gene Ubiquitin carboxyl-terminal hydrolase-related protein Neighboring gene Ubiquitin carboxyl-terminal hydrolase family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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NM_105185.3
NM_202362.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables cysteine-type deubiquitinase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Ubiquitin carboxyl-terminal hydrolase-related protein
NP_176691.2
  • Ubiquitin carboxyl-terminal hydrolase-related protein; FUNCTIONS IN: ubiquitin thiolesterase activity, zinc ion binding; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Protein of unknown function DUF627 (InterPro:IPR006866), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394), Zinc finger, C2H2-type (InterPro:IPR007087), Protein of unknown function DUF629 (InterPro:IPR006865); BEST Arabidopsis thaliana protein match is: Ubiquitin carboxyl-terminal hydrolase-related protein (TAIR:AT1G65110.1); Has 468 Blast hits to 425 proteins in 93 species: Archae - 0; Bacteria - 32; Metazoa - 49; Fungi - 38; Plants - 218; Viruses - 8; Other Eukaryotes - 123 (source: NCBI BLink).
NP_974091.1
  • Ubiquitin carboxyl-terminal hydrolase-related protein; FUNCTIONS IN: ubiquitin thiolesterase activity, zinc ion binding; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF627 (InterPro:IPR006866), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394), Zinc finger, C2H2-type (InterPro:IPR007087), Protein of unknown function DUF629 (InterPro:IPR006865); BEST Arabidopsis thaliana protein match is: Ubiquitin carboxyl-terminal hydrolase-related protein (TAIR:AT1G65110.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    24191179..24196337 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_202362.2 → NP_974091.1  Ubiquitin carboxyl-terminal hydrolase-related protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_974091.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654EMK6, F4I9U7
    Conserved Domains (3) summary
    pfam00443
    Location:848 → 1142
    UCH; Ubiquitin carboxyl-terminal hydrolase
    pfam04780
    Location:212 → 676
    DUF629; Protein of unknown function (DUF629)
    pfam04781
    Location:20 → 127
    DUF627; Protein of unknown function (DUF627)

  2. NM_105185.3 → NP_176691.2  Ubiquitin carboxyl-terminal hydrolase-related protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_176691.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654EMK6, F4I9U8
    Conserved Domains (3) summary
    pfam00443
    Location:848 → 1100
    UCH; Ubiquitin carboxyl-terminal hydrolase
    pfam04780
    Location:212 → 676
    DUF629; Protein of unknown function (DUF629)
    pfam04781
    Location:20 → 127
    DUF627; Protein of unknown function (DUF627)
Nucleotide Protein
Heading Accession and Version

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