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uncharacterized protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 841759, updated on 18-Sep-2024

Summary

Official Full Name
uncharacterized protein
Primary source
TAIR:AT1G53260
Locus tag
AT1G53260
See related
Araport:AT1G53260
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F12M16.16; F12M16_16
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Genomic context

Location:
chromosome: 1
Exon count:
5
Sequence:
Chromosome: 1; NC_003070.9 (19859267..19860976, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3 Neighboring gene Lactate/malate dehydrogenase family protein Neighboring gene histone-lysine N-methyltransferase, H3 lysine-79 specific-like protein Neighboring gene uncharacterized protein Neighboring gene ABC-2 type transporter family protein

General gene information

NM_001084240.1
NM_104204.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in cytidine to uridine editing IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
 
located_in nucleus HDA PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
 

General protein information

Preferred Names
uncharacterized protein
NP_001077709.1
  • LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: cobalt ion binding (TAIR:AT3G15000.1); Has 246 Blast hits to 241 proteins in 32 species: Archae - 0; Bacteria - 2; Metazoa - 7; Fungi - 16; Plants - 212; Viruses - 1; Other Eukaryotes - 8 (source: NCBI BLink).
NP_175733.2
  • LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: cobalt ion binding (TAIR:AT3G15000.1); Has 32763 Blast hits to 18534 proteins in 929 species: Archae - 22; Bacteria - 2420; Metazoa - 15140; Fungi - 5401; Plants - 5313; Viruses - 485; Other Eukaryotes - 3982 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    19859267..19860976 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001084240.1NP_001077709.1  uncharacterized protein AT1G53260 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001077709.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A8MS36
    Conserved Domains (1) summary
    PLN02217
    Location:50166
    PLN02217; probable pectinesterase/pectinesterase inhibitor
  2. NM_104204.2NP_175733.2  uncharacterized protein AT1G53260 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_175733.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q58G44
    Conserved Domains (1) summary
    cl23782
    Location:151233
    RCR; Chitin synthesis regulation, resistance to Congo red