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Conserved domains on  [gi|79364994|ref|NP_175733|]
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uncharacterized protein AT1G53260 [Arabidopsis thaliana]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PAT1 super family cl37801
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate ...
 126-235 6.48e-04

Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate chromosome transmission during cell division.


The actual alignment was detected with superfamily member pfam09770:

Pssm-ID: 401645 [Multi-domain]  Cd Length: 846  Bit Score: 40.79  E-value: 6.48e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79364994   126 PNMPPHIQPPNMNQNYRGPPPPPNMNQNYQGPPAPNMNQNYQGPPPSNMGQNYQGPPPPNMNQSYQGPPPPNMNQSYQGP 205
Cdd:pfam09770 218 PAQPPAAPPAQQAQQQQQFPPQIQQQQQPQQQPQQPQQHPGQGHPVTILQRPQSPQPDPAQPSIQPQAQQFHQQPPPVPV 297

                          90       100       110
                  ....*....|....*....|....*....|
gi 79364994   206 PPSNMGQNYRGPSLPPPNMSQNYEGPPPPN 235
Cdd:pfam09770 298 QPTQILQNPNRLSAARVGYPQNPQPGVQPA 327
 
Name Accession Description Interval E-value
PAT1 pfam09770
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate ...
 126-235 6.48e-04

Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate chromosome transmission during cell division.


Pssm-ID: 401645 [Multi-domain]  Cd Length: 846  Bit Score: 40.79  E-value: 6.48e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79364994   126 PNMPPHIQPPNMNQNYRGPPPPPNMNQNYQGPPAPNMNQNYQGPPPSNMGQNYQGPPPPNMNQSYQGPPPPNMNQSYQGP 205
Cdd:pfam09770 218 PAQPPAAPPAQQAQQQQQFPPQIQQQQQPQQQPQQPQQHPGQGHPVTILQRPQSPQPDPAQPSIQPQAQQFHQQPPPVPV 297

                          90       100       110
                  ....*....|....*....|....*....|
gi 79364994   206 PPSNMGQNYRGPSLPPPNMSQNYEGPPPPN 235
Cdd:pfam09770 298 QPTQILQNPNRLSAARVGYPQNPQPGVQPA 327
 
Name Accession Description Interval E-value
PAT1 pfam09770
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate ...
 126-235 6.48e-04

Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate chromosome transmission during cell division.


Pssm-ID: 401645 [Multi-domain]  Cd Length: 846  Bit Score: 40.79  E-value: 6.48e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79364994   126 PNMPPHIQPPNMNQNYRGPPPPPNMNQNYQGPPAPNMNQNYQGPPPSNMGQNYQGPPPPNMNQSYQGPPPPNMNQSYQGP 205
Cdd:pfam09770 218 PAQPPAAPPAQQAQQQQQFPPQIQQQQQPQQQPQQPQQHPGQGHPVTILQRPQSPQPDPAQPSIQPQAQQFHQQPPPVPV 297

                          90       100       110
                  ....*....|....*....|....*....|
gi 79364994   206 PPSNMGQNYRGPSLPPPNMSQNYEGPPPPN 235
Cdd:pfam09770 298 QPTQILQNPNRLSAARVGYPQNPQPGVQPA 327
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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