U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

transmembrane 50A-like protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 840608, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Full Name
transmembrane 50A-like protein
Primary source
TAIR:AT1G36980
Locus tag
AT1G36980
See related
Araport:AT1G36980
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T32E20.29; T32E20_29
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 1
Exon count:
5
Sequence:
Chromosome: 1; NC_003070.9 (14024634..14027040)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene transmembrane protein, putative (DUF1985) Neighboring gene pseudo Neighboring gene C-jun-amino-terminal kinase-interacting protein Neighboring gene ncRNA Neighboring gene Beta-galactosidase related protein

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
  2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

Interactions

Go to the top of the page Help
Products Interactant Other Gene Complex Source Pubs Description

General gene information

Go to the top of the page Help

Homology

NM_001333186.1
NM_103353.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

Go to the top of the page Help
Preferred Names
transmembrane 50A-like protein
NP_001319157.1
  • unknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0220 (InterPro:IPR007919); Has 424 Blast hits to 424 proteins in 159 species: Archae - 0; Bacteria - 0; Metazoa - 228; Fungi - 120; Plants - 62; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    14024634..14027040
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001333186.1 → NP_001319157.1  transmembrane 50A-like protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178W6Y1, A0A384KWC9, Q949Z8
    Conserved Domains (1) summary
    pfam05255
    Location:14 → 134
    UPF0220; Uncharacterized protein family (UPF0220)

  2. NM_103353.4 → NP_564477.1  transmembrane 50A-like protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_564477.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178W6Y1, A0A384KWC9, Q949Z8
    Conserved Domains (1) summary
    pfam05255
    Location:14 → 134
    UPF0220; Uncharacterized protein family (UPF0220)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools