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TPR2 Tetratricopeptide repeat (TPR)-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 839276, updated on 18-Sep-2024

Summary

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Official Symbol
TPR2
Official Full Name
Tetratricopeptide repeat (TPR)-like superfamily protein
Primary source
TAIR:AT1G04130
Locus tag
AT1G04130
See related
Araport:AT1G04130
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
AtTPR2; F20D22.10; F20D22_10; tetratricopeptide repeat 2
Summary
Encodes one of the 36 carboxylate clamp (CC)-tetratricopeptide repeat (TPR) proteins (Prasad 2010, Pubmed ID: 20856808). Interacts with Hsp90/Hsp70 as co-chaperone.
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Genomic context

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See TPR2 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
8
Sequence:
Chromosome: 1; NC_003070.9 (1073274..1075568)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene multidrug resistance-associated protein 5 Neighboring gene ncRNA Neighboring gene Transducin family protein / WD-40 repeat family protein Neighboring gene C2 calcium/lipid-binding plant phosphoribosyltransferase family protein Neighboring gene myosin XI B

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. In silico identification of carboxylate clamp type tetratricopeptide repeat proteins in Arabidopsis and rice as putative co-chaperones of Hsp90/Hsp70. Prasad BD, et al. PLoS One, 2010 Sep 15. PMID 20856808, Free PMC Article
  2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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NM_001331464.1
NM_100294.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables Hsp90 protein binding IEA
Inferred from Electronic Annotation
more info
  
enables Hsp90 protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Tetratricopeptide repeat (TPR)-like superfamily protein
NP_563702.1
  • Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G56440.1); Has 5277 Blast hits to 4657 proteins in 398 species: Archae - 14; Bacteria - 308; Metazoa - 2191; Fungi - 837; Plants - 950; Viruses - 0; Other Eukaryotes - 977 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    1073274..1075568
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_100294.3 → NP_563702.1  Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_563702.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178W7K7, F4I456
    Conserved Domains (3) summary
    sd00006
    Location:31 → 61
    TPR; TPR repeat [structural motif]
    pfam13414
    Location:31 → 102
    TPR_11; TPR repeat
    pfam14559
    Location:85 → 145
    TPR_19; Tetratricopeptide repeat

  2. NM_001331464.1 → NP_001320488.1  Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q940R2
Nucleotide Protein
Heading Accession and Version

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