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RING/U-box superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 839223, updated on 18-Sep-2024

Summary

Official Full Name
RING/U-box superfamily protein
Primary source
TAIR:AT1G26800
Locus tag
AT1G26800
See related
Araport:AT1G26800
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T24P13.19; T24P13_19
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Genomic context

Location:
chromosome: 1
Exon count:
1
Sequence:
Chromosome: 1; NC_003070.9 (9285025..9286395, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Plant self-incompatibility protein S1 family Neighboring gene Plant self-incompatibility protein S1 family Neighboring gene galactosyltransferase1 Neighboring gene FBD domain family

Interactions

General gene information

NM_102444.3

Gene Ontology Provided by TAIR

Component Evidence Code Pubs
located_in cytoplasm PubMed 
located_in cytosol PubMed 
located_in nucleus  

General protein information

Preferred Names
RING/U-box superfamily protein
NP_564263.1
  • RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G14200.1); Has 9899 Blast hits to 9869 proteins in 270 species: Archae - 0; Bacteria - 0; Metazoa - 2681; Fungi - 828; Plants - 5098; Viruses - 14; Other Eukaryotes - 1278 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    9285025..9286395 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_102444.3 → NP_564263.1  RING/U-box superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_564263.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8LCT4, Q9LQX2
    UniProtKB/TrEMBL
    A0A178W1Z6, A0A5S9W3I5, A0A654ED43
    Conserved Domains (2) summary
    cd00162
    Location:113 → 153
    RING_Ubox; RING-H2 finger (C3H2C3-type) [structural motif]
    cl17238
    Location:112 → 157
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
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