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nuclear pore complex protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 839047, updated on 18-Sep-2024

Summary

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Official Full Name
nuclear pore complex protein
Primary source
TAIR:AT1G24310
Locus tag
AT1G24310
See related
Araport:AT1G24310
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F3I6.25; F3I6_25
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Genomic context

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Location:
chromosome: 1
Exon count:
9
Sequence:
Chromosome: 1; NC_003070.9 (8624014..8626405)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene AAA-type ATPase family protein Neighboring gene ncRNA Neighboring gene GYF domain-containing protein Neighboring gene Six-hairpin glycosidases superfamily protein Neighboring gene ARM repeat superfamily protein Neighboring gene FAD/NAD(P)-binding oxidoreductase family protein Neighboring gene Acid phosphatase/vanadium-dependent haloperoxidase-related protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Proteomic analysis of the Arabidopsis nucleolus suggests novel nucleolar functions. Pendle AF, et al. Mol Biol Cell, 2005 Jan. PMID 15496452, Free PMC Article
  2. Identification and characterization of nuclear pore complex components in Arabidopsis thaliana. Tamura K, et al. Plant Cell, 2010 Dec. PMID 21189294, Free PMC Article
  3. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
  4. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
  5. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_102277.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in nuclear envelope IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleolus HDA PubMed 

General protein information

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Preferred Names
nuclear pore complex protein
NP_173841.1
  • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; Has 2922 Blast hits to 2454 proteins in 263 species: Archae - 0; Bacteria - 57; Metazoa - 1043; Fungi - 654; Plants - 388; Viruses - 11; Other Eukaryotes - 769 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    8624014..8626405
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_102277.4 → NP_173841.1  nuclear pore complex protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_173841.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O48698, Q8GYF7
    UniProtKB/TrEMBL
    A0A178WPA4
    Conserved Domains (1) summary
    pfam13874
    Location:164 → 306
    Nup54; Nucleoporin complex subunit 54
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8GYF7.1

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