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histone deacetylase complex subunit [ Arabidopsis thaliana (thale cress) ]

Gene ID: 838515, updated on 18-Sep-2024

Summary

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Official Full Name
histone deacetylase complex subunit
Primary source
TAIR:AT1G19330
Locus tag
AT1G19330
See related
Araport:AT1G19330
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F18O14.5; F18O14_5
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Genomic context

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Location:
chromosome: 1
Exon count:
6
Sequence:
Chromosome: 1; NC_003070.9 (6680423..6683559, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene RING/U-box superfamily protein Neighboring gene Pathogenesis-related thaumatin superfamily protein Neighboring gene Methyltransferase MT-A70 family protein Neighboring gene Brassinosteroid signaling positive regulator (BZR1) family protein Neighboring gene Nucleotide-diphospho-sugar transferase family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The Arabidopsis Sin3-HDAC Complex Facilitates Temporal Histone Deacetylation at the CCA1 and PRR9 Loci for Robust Circadian Oscillation. Lee HG, et al. Front Plant Sci, 2019. PMID 30833956, Free PMC Article
  2. Photoperiodic regulation of flowering time through periodic histone deacetylation of the florigen gene FT. Gu X, et al. PLoS Biol, 2013 Sep. PMID 24019760, Free PMC Article
  3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001198104.1
NM_101790.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within regulation of circadian rhythm IEP
Inferred from Expression Pattern
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
histone deacetylase complex subunit
NP_001077561.1
  • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G75060.1); Has 145 Blast hits to 145 proteins in 43 species: Archae - 0; Bacteria - 0; Metazoa - 40; Fungi - 0; Plants - 104; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
NP_001185033.1
  • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G75060.1).
NP_564079.1
  • unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G75060.1); Has 145 Blast hits to 145 proteins in 43 species: Archae - 0; Bacteria - 0; Metazoa - 40; Fungi - 0; Plants - 104; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    6680423..6683559 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001084092.2 → NP_001077561.1  histone deacetylase complex subunit [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001077561.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178W980, A0A5S9V6G1, Q9LN65
    Conserved Domains (1) summary
    pfam13867
    Location:167 → 220
    SAP30_Sin3_bdg; Sin3 binding region of histone deacetylase complex subunit SAP30

  2. NM_101790.4 → NP_564079.1  histone deacetylase complex subunit [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_564079.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178W9H7, A0A178WB70, Q8LA64
    Conserved Domains (1) summary
    pfam13867
    Location:172 → 225
    SAP30_Sin3_bdg; Sin3 binding region of histone deacetylase complex subunit SAP30

  3. NM_001198104.1 → NP_001185033.1  histone deacetylase complex subunit [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001185033.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178W9H7, F4HP43
    Conserved Domains (1) summary
    pfam13867
    Location:174 → 223
    SAP30_Sin3_bdg; Sin3 binding region of histone deacetylase complex subunit SAP30
Nucleotide Protein
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