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Polynucleotidyl transferase, ribonuclease H-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 836230, updated on 18-Sep-2024

Summary

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Official Full Name
Polynucleotidyl transferase, ribonuclease H-like superfamily protein
Primary source
TAIR:AT5G61090
Locus tag
AT5G61090
See related
Araport:AT5G61090
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
MAF19.21; MAF19_21
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Genomic context

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Location:
chromosome: 5
Exon count:
6
Sequence:
Chromosome: 5; NC_003076.8 (24574652..24578200, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene histone deacetylase 5 Neighboring gene histone deacetylase of the RPD3/HDA1 superfamily 18 Neighboring gene uncharacterized protein Neighboring gene zinc ion binding protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

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NM_001345441.1
NM_125502.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables RNA-DNA hybrid ribonuclease activity IEA
Inferred from Electronic Annotation
more info
  
enables histone reader activity IEA
Inferred from Electronic Annotation
more info
  
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in negative regulation of transcription elongation by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Polynucleotidyl transferase, ribonuclease H-like superfamily protein
NP_200917.4
  • Polynucleotidyl transferase, ribonuclease H-like superfamily protein; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G61120.1); Has 24046 Blast hits to 15037 proteins in 1367 species: Archae - 80; Bacteria - 6670; Metazoa - 6830; Fungi - 2746; Plants - 3211; Viruses - 972; Other Eukaryotes - 3537 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    24574652..24578200 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_125502.5 → NP_200917.4  Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_200917.4

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654GD32, Q9FNQ6
    Conserved Domains (3) summary
    cd06222
    Location:522 → 626
    RNase_H_like; Ribonuclease H-like superfamily, including RNase H, HI, HII, HIII, and RNase-like domain IV of spliceosomal protein Prp8
    pfam02993
    Location:16 → 118
    MCPVI; Minor capsid protein VI
    pfam16031
    Location:41 → 158
    TonB_N; TonB N-terminal region

  2. NM_001345441.1 → NP_001330380.1  Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654GD32, Q9FNQ6
Nucleotide Protein
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