NRPC2 nuclear RNA polymerase C2 [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Symbol: NRPC2
Official Full Name: nuclear RNA polymerase C2
Primary source: TAIR:AT5G45140
Locus tag: AT5G45140
See related: Araport:AT5G45140
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: K18C1.1; K18C1_1; nuclear RNA polymerase C2
Summary: Encodes a subunit of RNA polymerase III (aka RNA polymerase C).
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Genomic context

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See NRPC2 in Genome Data Viewer

Location:: chromosome: 5

Exon count:: 40

Sequence:: Chromosome: 5; NC_003076.8 (18247149..18258197, complement)

Chromosome 5 - NC_003076.8 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Homology

Orthologs from OrthoDB

NM_001344590.1

Supported by ESTs:

NM_001344591.1

Supported by ESTs:

NM_123882.5

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables DNA binding	IEA Inferred from Electronic Annotation more info
enables DNA-directed 5'-3' RNA polymerase activity	IEA Inferred from Electronic Annotation more info
enables ribonucleoside binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in DNA-templated transcription	IEA Inferred from Electronic Annotation more info
involved_in megagametogenesis	IMP Inferred from Mutant Phenotype more info	PubMed

Component	Evidence Code	Pubs
located_in chloroplast	ISM Inferred from Sequence Model more info
located_in nucleus	ISM Inferred from Sequence Model more info

General protein information

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Preferred Names: nuclear RNA polymerase C2

NP_199327.4

nuclear RNA polymerase C2 (NRPC2); FUNCTIONS IN: DNA-directed RNA polymerase activity, ribonucleoside binding, DNA binding; INVOLVED IN: transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-directed RNA polymerase, subunit 2, domain 6 (InterPro:IPR007120), RNA polymerase Rpb2, domain 7 (InterPro:IPR007641), RNA polymerase, beta subunit, protrusion (InterPro:IPR007644), RNA polymerase Rpb2, domain 3 (InterPro:IPR007645), DNA-directed RNA polymerase, subunit 2 (InterPro:IPR015712), RNA polymerase Rpb2, domain 2 (InterPro:IPR007642), RNA polymerase Rpb2, domain 4 (InterPro:IPR007646), RNA polymerase Rpb2, domain 5 (InterPro:IPR007647), RNA polymerase, beta subunit, conserved site (InterPro:IPR007121); BEST Arabidopsis thaliana protein match is: DNA-directed RNA polymerase family protein (TAIR:AT4G21710.1); Has 31946 Blast hits to 25220 proteins in 8516 species: Archae - 496; Bacteria - 14545; Metazoa - 599; Fungi - 7189; Plants - 2320; Viruses - 240; Other Eukaryotes - 6557 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003076.8 Reference assembly

Range

18247149..18258197 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_123882.5 → NP_199327.4 nuclear RNA polymerase C2 [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_199327.4

Status: REVIEWED

UniProtKB/Swiss-Prot

F4KD38, Q9FKF1

UniProtKB/TrEMBL

A0A178UEB4, A0A5S9YBQ6

Conserved Domains (3) summary

cd00653
Location:45 → 1157

RNA_pol_B_RPB2; RNA polymerase beta subunit. RNA polymerases catalyse the DNA dependent polymerization of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Each RNA polymerase ...

pfam04566
Location:550 → 611

RNA_pol_Rpb2_4; RNA polymerase Rpb2, domain 4

pfam04567
Location:632 → 683

RNA_pol_Rpb2_5; RNA polymerase Rpb2, domain 5
NM_001344590.1 → NP_001332060.1 nuclear RNA polymerase C2 [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/Swiss-Prot

F4KD38, Q9FKF1

UniProtKB/TrEMBL

A0A178UEB4, A0A5S9YBQ6

Conserved Domains (3) summary

cd00653
Location:45 → 1157

RNA_pol_B_RPB2; RNA polymerase beta subunit. RNA polymerases catalyse the DNA dependent polymerization of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Each RNA polymerase ...

pfam04566
Location:550 → 611

RNA_pol_Rpb2_4; RNA polymerase Rpb2, domain 4

pfam04567
Location:632 → 683

RNA_pol_Rpb2_5; RNA polymerase Rpb2, domain 5
NM_001344591.1 → NP_001332059.1 nuclear RNA polymerase C2 [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A1P8BFS9