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transcription factor, putative (Protein of unknown function, DUF547) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 834278, updated on 18-Sep-2024

Summary

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Official Full Name
transcription factor, putative (Protein of unknown function, DUF547)
Primary source
TAIR:AT5G42690
Locus tag
AT5G42690
See related
Araport:AT5G42690
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
MJB21.6; MJB21_6
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Genomic context

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Location:
chromosome: 5
Exon count:
12
Sequence:
Chromosome: 5; NC_003076.8 (17116376..17119892, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene MIZU-KUSSEI-like protein (Protein of unknown function, DUF617) Neighboring gene AP2/B3-like transcriptional factor family protein Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

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NM_001085225.2
NM_001085226.1
NM_001344457.1
NM_001344458.1
NM_123633.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in mitochondrion ISM
Inferred from Sequence Model
more info
  
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
transcription factor, putative (Protein of unknown function, DUF547)
NP_001078694.1
  • Protein of unknown function, DUF547; LOCATED IN: chloroplast; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF547 (InterPro:IPR006869); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF547 (TAIR:AT4G37080.3); Has 821 Blast hits to 802 proteins in 158 species: Archae - 4; Bacteria - 211; Metazoa - 31; Fungi - 2; Plants - 490; Viruses - 0; Other Eukaryotes - 83 (source: NCBI BLink).
NP_001078695.1
  • Protein of unknown function, DUF547; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF547 (InterPro:IPR006869); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF547 (TAIR:AT4G37080.3); Has 830 Blast hits to 816 proteins in 172 species: Archae - 4; Bacteria - 246; Metazoa - 31; Fungi - 0; Plants - 470; Viruses - 0; Other Eukaryotes - 79 (source: NCBI BLink).
NP_199083.2
  • Protein of unknown function, DUF547; LOCATED IN: chloroplast; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF547 (InterPro:IPR006869); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF547 (TAIR:AT4G37080.3); Has 811 Blast hits to 793 proteins in 155 species: Archae - 4; Bacteria - 209; Metazoa - 31; Fungi - 2; Plants - 489; Viruses - 0; Other Eukaryotes - 76 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    17116376..17119892 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001085225.2 → NP_001078694.1  transcription factor, putative (Protein of unknown function, DUF547) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001078694.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q45GG2, Q5BPH9
    Conserved Domains (2) summary
    pfam04784
    Location:333 → 461
    DUF547; Protein of unknown function, DUF547
    pfam14389
    Location:48 → 129
    Lzipper-MIP1; Leucine-zipper of ternary complex factor MIP1

  2. NM_001344457.1 → NP_001331168.1  transcription factor, putative (Protein of unknown function, DUF547) [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q45GG2, Q5BPH9

  3. NM_123633.3 → NP_199083.2  transcription factor, putative (Protein of unknown function, DUF547) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_199083.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    F4K318, Q5BPH9
    Conserved Domains (2) summary
    pfam04784
    Location:332 → 460
    DUF547; Protein of unknown function, DUF547
    pfam14389
    Location:48 → 129
    Lzipper-MIP1; Leucine-zipper of ternary complex factor MIP1

  4. NM_001085226.1 → NP_001078695.1  transcription factor, putative (Protein of unknown function, DUF547) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001078695.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A7G2FFA9, Q45GG0
    Conserved Domains (2) summary
    pfam04784
    Location:281 → 409
    DUF547; Protein of unknown function, DUF547
    pfam14389
    Location:7 → 77
    Lzipper-MIP1; Leucine-zipper of ternary complex factor MIP1

  5. NM_001344458.1 → NP_001331167.1  transcription factor, putative (Protein of unknown function, DUF547) [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8BD16, Q9FMZ5
Nucleotide Protein
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