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MYB16 myb domain protein 16 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 831383, updated on 18-Sep-2024

Summary

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Official Symbol
MYB16
Official Full Name
myb domain protein 16
Primary source
TAIR:AT5G15310
Locus tag
AT5G15310
See related
Araport:AT5G15310
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ATMIXTA; ATMYB16; F8M21.200; F8M21_200; myb domain protein 16
Summary
Member of the R2R3 factor gene family.
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Genomic context

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See MYB16 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
4
Sequence:
Chromosome: 5; NC_003076.8 (4974671..4976470)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ATP synthase E chain Neighboring gene SPX domain-containing protein 4

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Misregulation of MYB16 expression causes stomatal cluster formation by disrupting polarity during asymmetric cell divisions. Yang SL, et al. Plant Cell, 2022 Jan 20. PMID 34718767, Free PMC Article
  2. The MIXTA-like transcription factor MYB16 is a major regulator of cuticle formation in vegetative organs. Oshima Y, et al. Plant Signal Behav, 2013 Nov. PMID 24169067, Free PMC Article
  3. Control of cell and petal morphogenesis by R2R3 MYB transcription factors. Baumann K, et al. Development, 2007 May. PMID 17376813
  4. MIXTA-like transcription factors and WAX INDUCER1/SHINE1 coordinately regulate cuticle development in Arabidopsis and Torenia fournieri. Oshima Y, et al. Plant Cell, 2013 May. PMID 23709630, Free PMC Article
  5. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Riechmann JL, et al. Science, 2000 Dec 15. PMID 11118137

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Misregulation of MYB16 expression causes stomatal cluster formation by disrupting polarity during asymmetric cell divisions.
    Title: Misregulation of MYB16 expression causes stomatal cluster formation by disrupting polarity during asymmetric cell divisions.
  2. These results suggest that MYB16 functions as a major regulator of cuticle formation in vegetative organs, in addition to its effect in reproductive organs and trichomes.
    Title: The MIXTA-like transcription factor MYB16 is a major regulator of cuticle formation in vegetative organs.
  3. Data indicate that the MIXTA-like MYB transcription factors MYB106 and MYB16, which regulate epidermal cell morphology, also regulate cuticle development coordinately with WIN1/SHN1.
    Title: MIXTA-like transcription factors and WAX INDUCER1/SHINE1 coordinately regulate cuticle development in Arabidopsis and Torenia fournieri.
Submit: New GeneRIF Correction

General gene information

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NM_001085120.1
NM_001343397.1
NM_121535.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables DNA-binding transcription factor activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within cell morphogenesis IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in cell morphogenesis IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in cuticle pattern formation IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in regulation of cutin biosynthetic process IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
myb domain protein 16
NP_001078589.1
  • myb domain protein 16 (MYB16); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: myb domain protein 106 (TAIR:AT3G01140.1); Has 8674 Blast hits to 8179 proteins in 471 species: Archae - 0; Bacteria - 0; Metazoa - 652; Fungi - 457; Plants - 5850; Viruses - 4; Other Eukaryotes - 1711 (source: NCBI BLink).
NP_197035.1
  • myb domain protein 16 (MYB16); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 106 (TAIR:AT3G01140.1); Has 8813 Blast hits to 8178 proteins in 474 species: Archae - 0; Bacteria - 0; Metazoa - 721; Fungi - 488; Plants - 5846; Viruses - 4; Other Eukaryotes - 1754 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    4974671..4976470
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001343396.1 → NP_001330733.1  myb domain protein 16 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8BBP8
    Conserved Domains (1) summary
    PLN03212
    Location:9 → 49
    PLN03212; Transcription repressor MYB5; Provisional

  2. NM_121535.4 → NP_197035.1  myb domain protein 16 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_197035.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9LXF1
    UniProtKB/TrEMBL
    A0A178UJ10, A0A5S9Y4B7
    Conserved Domains (1) summary
    PLN03091
    Location:1 → 131
    PLN03091; hypothetical protein; Provisional

  3. NM_001343397.1 → NP_001330734.1  myb domain protein 16 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8BBQ7
    Conserved Domains (1) summary
    PLN03091
    Location:1 → 131
    PLN03091; hypothetical protein; Provisional

  4. NM_001085120.1 → NP_001078589.1  myb domain protein 16 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001078589.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9Y4B7, F4K9R6
    Conserved Domains (2) summary
    smart00717
    Location:14 → 63
    SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
    pfam00249
    Location:14 → 61
    Myb_DNA-binding; Myb-like DNA-binding domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9LXF1.1

Gene LinkOut

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