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TGA4 TGACG motif-binding factor 4 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 830866, updated on 18-Sep-2024

Summary

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Official Symbol
TGA4
Official Full Name
TGACG motif-binding factor 4
Primary source
TAIR:AT5G10030
Locus tag
AT5G10030
See related
Araport:AT5G10030
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
OBF4; OCS BINDING ELEMENT 4; OCS ELEMENT BINDING FACTOR 4; OCTOPINE SYNTHASE ELEMENT-BINDING PROTEIN; T31P16.20; T31P16_20; TGACG motif-binding factor 4
Summary
Encodes a member of basic leucine zipper transcription gene family. Nomenclature according to Xiang, et al. (1997).
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Genomic context

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See TGA4 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
10
Sequence:
Chromosome: 5; NC_003076.8 (3137289..3144269, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene myosin-H heavy protein Neighboring gene Leucine-rich receptor-like protein kinase family protein Neighboring gene uncharacterized protein Neighboring gene NAD(P)-binding Rossmann-fold superfamily protein Neighboring gene ENTH/VHS family protein Neighboring gene RNase L inhibitor protein-like protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. AtTGA4, a bZIP transcription factor, confers drought resistance by enhancing nitrate transport and assimilation in Arabidopsis thaliana. Zhong L, et al. Biochem Biophys Res Commun, 2015 Feb 13. PMID 25596127
  2. Brassinosteroids enhance salicylic acid-mediated immune responses by inhibiting BIN2 phosphorylation of clade I TGA transcription factors in Arabidopsis. Kim YW, et al. Mol Plant, 2022 Jun 6. PMID 35524409
  3. Isolation and characterization of two related Arabidopsis ocs-element bZIP binding proteins. Zhang B, et al. Plant J, 1993 Oct. PMID 8252072
  4. Arabidopsis thaliana ethylene-responsive element binding protein (AtEBP), an ethylene-inducible, GCC box DNA-binding protein interacts with an ocs element binding protein. Büttner M, et al. Proc Natl Acad Sci U S A, 1997 May 27. PMID 9159183, Free PMC Article
  5. Systems approach identifies TGA1 and TGA4 transcription factors as important regulatory components of the nitrate response of Arabidopsis thaliana roots. Alvarez JM, et al. Plant J, 2014 Oct. PMID 25039575

See all (23) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Clade I TGACG-Motif Binding Basic Leucine Zipper Transcription Factors Mediate BLADE-ON-PETIOLE-Dependent Regulation of Development.
    Title: Clade I TGACG-Motif Binding Basic Leucine Zipper Transcription Factors Mediate BLADE-ON-PETIOLE-Dependent Regulation of Development.
  2. Following drought stress there were higher nitrogen and proline contents in transgenic AtTGA4 plants than in wild type controls, and activity of the key enzyme nitrite reductase involved in nitrate assimilation processes was also higher.
    Title: AtTGA4, a bZIP transcription factor, confers drought resistance by enhancing nitrate transport and assimilation in Arabidopsis thaliana.
  3. TGA1 and TGA4 as important regulatory factors of the nitrate response in Arabidopsis roots.
    Title: Systems approach identifies TGA1 and TGA4 transcription factors as important regulatory components of the nitrate response of Arabidopsis thaliana roots.
  4. clade I TGA factors as positive regulators of one or more ER-related secretion pathways
    Title: Arabidopsis clade I TGA factors regulate apoplastic defences against the bacterial pathogen Pseudomonas syringae through endoplasmic reticulum-based processes.
  5. OBF4 can regulate flowering expression through the formation of a protein complex with CONSTANS
    Title: Isolation of CONSTANS as a TGA4/OBF4 interacting protein.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001203341.1

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables DNA binding TAS
Traceable Author Statement
more info
 PubMed 
enables DNA-binding transcription factor activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
enables DNA-binding transcription factor activity NAS
Non-traceable Author Statement
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables transcription cis-regulatory region binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within defense response to bacterium IGI
Inferred from Genetic Interaction
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus HDA PubMed 
located_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
TGACG motif-binding factor 4
NP_001190270.1
  • TGACG motif-binding factor 4 (TGA4); CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: bZIP transcription factor family protein (TAIR:AT5G65210.5).
NP_196565.1
  • TGACG motif-binding factor 4 (TGA4); FUNCTIONS IN: calmodulin binding, DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to cold, defense response to bacterium; LOCATED IN: nucleus; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: bZIP transcription factor family protein (TAIR:AT5G65210.5); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    3137289..3144269 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_121041.5 → NP_196565.1  TGACG motif-binding factor 4 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_196565.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q39162, Q9LX25
    UniProtKB/TrEMBL
    A0A178UQU7, A0A654FZU4, Q24JJ3
    Conserved Domains (3) summary
    cd14686
    Location:81 → 131
    bZIP; coiled coil [structural motif]
    pfam14144
    Location:166 → 240
    DOG1; Seed dormancy control
    cl21462
    Location:80 → 131
    bZIP; Basic leucine zipper (bZIP) domain of bZIP transcription factors: a DNA-binding and dimerization domain

  2. NM_001343085.1 → NP_001330617.1  TGACG motif-binding factor 4 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q39162, Q9LX25
    UniProtKB/TrEMBL
    A0A178UQU7, A0A654FZU4, Q24JJ3
    Conserved Domains (3) summary
    cd14686
    Location:81 → 131
    bZIP; coiled coil [structural motif]
    pfam14144
    Location:166 → 240
    DOG1; Seed dormancy control
    cl21462
    Location:80 → 131
    bZIP; Basic leucine zipper (bZIP) domain of bZIP transcription factors: a DNA-binding and dimerization domain

  3. NM_001343084.1 → NP_001330616.1  TGACG motif-binding factor 4 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q39162, Q9LX25
    UniProtKB/TrEMBL
    A0A178UQU7, A0A654FZU4, Q24JJ3
    Conserved Domains (3) summary
    cd14686
    Location:81 → 131
    bZIP; coiled coil [structural motif]
    pfam14144
    Location:166 → 240
    DOG1; Seed dormancy control
    cl21462
    Location:80 → 131
    bZIP; Basic leucine zipper (bZIP) domain of bZIP transcription factors: a DNA-binding and dimerization domain

  4. NM_001343086.1 → NP_001330618.1  TGACG motif-binding factor 4 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q39162, Q9LX25
    UniProtKB/TrEMBL
    A0A178UQU7, A0A654FZU4, Q24JJ3
    Conserved Domains (3) summary
    cd14686
    Location:81 → 131
    bZIP; coiled coil [structural motif]
    pfam14144
    Location:166 → 240
    DOG1; Seed dormancy control
    cl21462
    Location:80 → 131
    bZIP; Basic leucine zipper (bZIP) domain of bZIP transcription factors: a DNA-binding and dimerization domain

  5. NM_001203341.1 → NP_001190270.1  TGACG motif-binding factor 4 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001190270.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q39162, Q9LX25
    UniProtKB/TrEMBL
    A0A178UQU7, A0A654FZU4, Q24JJ3
    Conserved Domains (3) summary
    cd14686
    Location:81 → 131
    bZIP; coiled coil [structural motif]
    pfam14144
    Location:166 → 240
    DOG1; Seed dormancy control
    cl21462
    Location:80 → 131
    bZIP; Basic leucine zipper (bZIP) domain of bZIP transcription factors: a DNA-binding and dimerization domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q39162.2

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