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transducin family protein / WD-40 repeat family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 830756, updated on 18-Sep-2024

Summary

Official Full Name
transducin family protein / WD-40 repeat family protein
Primary source
TAIR:AT5G08560
Locus tag
AT5G08560
See related
Araport:AT5G08560
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
MAH20.12; MAH20_12
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Genomic context

Location:
chromosome: 5
Exon count:
5
Sequence:
Chromosome: 5; NC_003076.8 (2770782..2774714, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene ribosomal RNA small subunit methyltransferase J Neighboring gene ncRNA Neighboring gene GC-rich sequence DNA-binding factor-like protein Neighboring gene Transcription initiation Spt4-like protein Neighboring gene Pyruvate kinase family protein Neighboring gene Calcium-binding EF hand family protein

Bibliography

Interactions

General gene information

NM_001085077.1
NM_001343018.1
NM_120942.3

Gene Ontology Provided by TAIR

Component Evidence Code Pubs
located_in cytoplasm PubMed 
located_in cytoplasm  
located_in nucleus PubMed 

General protein information

Preferred Names
transducin family protein / WD-40 repeat family protein
NP_001318513.1
  • transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), CTLH, C-terminal LisH motif (InterPro:IPR006595), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), LisH dimerisation motif (InterPro:IPR006594), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT5G43920.1); Has 58921 Blast hits to 28907 proteins in 822 species: Archae - 84; Bacteria - 8409; Metazoa - 23216; Fungi - 12597; Plants - 7341; Viruses - 6; Other Eukaryotes - 7268 (source: NCBI BLink).
NP_196473.1
  • transducin family protein / WD-40 repeat family protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), CTLH, C-terminal LisH motif (InterPro:IPR006595), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), LisH dimerisation motif (InterPro:IPR006594), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT5G43920.1); Has 58921 Blast hits to 28907 proteins in 822 species: Archae - 84; Bacteria - 8409; Metazoa - 23216; Fungi - 12597; Plants - 7341; Viruses - 6; Other Eukaryotes - 7268 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    2770782..2774714 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_120942.3NP_196473.1  transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_196473.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9FNN2
    UniProtKB/TrEMBL
    A0A5S9Y2K7, A0A654FZX1, A0A7G2F6U1
    Conserved Domains (4) summary
    smart00667
    Location:6396
    LisH; Lissencephaly type-1-like homology motif
    smart00668
    Location:97154
    CTLH; C-terminal to LisH motif
    cd00200
    Location:268559
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:277317
    7WD40; WD40 repeat [structural motif]
  2. NM_001085077.1NP_001078546.1  transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001078546.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9FNN2
    UniProtKB/TrEMBL
    A0A5S9Y2K7, A0A654FZX1, A0A7G2F6U1
    Conserved Domains (4) summary
    smart00667
    Location:6396
    LisH; Lissencephaly type-1-like homology motif
    smart00668
    Location:97154
    CTLH; C-terminal to LisH motif
    cd00200
    Location:268559
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:277317
    7WD40; WD40 repeat [structural motif]
  3. NM_001343018.1NP_001318513.1  transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9FNN2
    UniProtKB/TrEMBL
    A0A5S9Y2K7, A0A654FZX1, A0A7G2F6U1
    Conserved Domains (4) summary
    smart00667
    Location:6396
    LisH; Lissencephaly type-1-like homology motif
    smart00668
    Location:97154
    CTLH; C-terminal to LisH motif
    cd00200
    Location:268559
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:277317
    7WD40; WD40 repeat [structural motif]
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