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Transmembrane CLPTM1 family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 830749, updated on 18-Sep-2024

Summary

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Official Full Name
Transmembrane CLPTM1 family protein
Primary source
TAIR:AT5G08500
Locus tag
AT5G08500
See related
Araport:AT5G08500
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F8L15.19
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Genomic context

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Location:
chromosome: 5
Exon count:
11
Sequence:
Chromosome: 5; NC_003076.8 (2748133..2751888)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene peroxisome 1 Neighboring gene VQ motif-containing protein Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein Neighboring gene Defensin-like (DEFL) family protein Neighboring gene Pentatricopeptide repeat (PPR) superfamily protein Neighboring gene Duplicated homeodomain-like superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

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NM_120935.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  

General protein information

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Preferred Names
Transmembrane CLPTM1 family protein
NP_196467.1
  • Transmembrane CLPTM1 family protein; CONTAINS InterPro DOMAIN/s: Cleft lip and palate transmembrane 1 (InterPro:IPR008429); BEST Arabidopsis thaliana protein match is: Transmembrane CLPTM1 family protein (TAIR:AT5G23575.1); Has 489 Blast hits to 489 proteins in 171 species: Archae - 0; Bacteria - 0; Metazoa - 235; Fungi - 77; Plants - 58; Viruses - 0; Other Eukaryotes - 119 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    2748133..2751888
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001343015.1 → NP_001332181.1  Transmembrane CLPTM1 family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8BG69, A0A5S9Y3C6

  2. NM_120935.4 → NP_196467.1  Transmembrane CLPTM1 family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_196467.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9Y3C6, Q9FNN8
    Conserved Domains (1) summary
    pfam05602
    Location:33 → 463
    CLPTM1; Cleft lip and palate transmembrane protein 1 (CLPTM1)
Nucleotide Protein
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