LOCUS NM_001343015 2380 bp mRNA linear PLN 20-OCT-2022
DEFINITION Arabidopsis thaliana Transmembrane CLPTM1 family protein
(AT5G08500), mRNA.
ACCESSION NM_001343015
VERSION NM_001343015.1
DBLINK BioProject: PRJNA116
BioSample: SAMN03081427
KEYWORDS RefSeq.
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 2380)
AUTHORS Tabata,S., Kaneko,T., Nakamura,Y., Kotani,H., Kato,T., Asamizu,E.,
Miyajima,N., Sasamoto,S., Kimura,T., Hosouchi,T., Kawashima,K.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Naruo,K., Okumura,S., Shinpo,S., Takeuchi,C., Wada,T.,
Watanabe,A., Yamada,M., Yasuda,M., Sato,S., de la Bastide,M.,
Huang,E., Spiegel,L., Gnoj,L., O'Shaughnessy,A., Preston,R.,
Habermann,K., Murray,J., Johnson,D., Rohlfing,T., Nelson,J.,
Stoneking,T., Pepin,K., Spieth,J., Sekhon,M., Armstrong,J.,
Becker,M., Belter,E., Cordum,H., Cordes,M., Courtney,L.,
Courtney,W., Dante,M., Du,H., Edwards,J., Fryman,J., Haakensen,B.,
Lamar,E., Latreille,P., Leonard,S., Meyer,R., Mulvaney,E.,
Ozersky,P., Riley,A., Strowmatt,C., Wagner-McPherson,C., Wollam,A.,
Yoakum,M., Bell,M., Dedhia,N., Parnell,L., Shah,R., Rodriguez,M.,
See,L.H., Vil,D., Baker,J., Kirchoff,K., Toth,K., King,L.,
Bahret,A., Miller,B., Marra,M., Martienssen,R., McCombie,W.R.,
Wilson,R.K., Murphy,G., Bancroft,I., Volckaert,G., Wambutt,R.,
Dusterhoft,A., Stiekema,W., Pohl,T., Entian,K.D., Terryn,N.,
Hartley,N., Bent,E., Johnson,S., Langham,S.A., McCullagh,B.,
Robben,J., Grymonprez,B., Zimmermann,W., Ramsperger,U., Wedler,H.,
Balke,K., Wedler,E., Peters,S., van Staveren,M., Dirkse,W.,
Mooijman,P., Lankhorst,R.K., Weitzenegger,T., Bothe,G., Rose,M.,
Hauf,J., Berneiser,S., Hempel,S., Feldpausch,M., Lamberth,S.,
Villarroel,R., Gielen,J., Ardiles,W., Bents,O., Lemcke,K.,
Kolesov,G., Mayer,K., Rudd,S., Schoof,H., Schueller,C.,
Zaccaria,P., Mewes,H.W., Bevan,M. and Fransz,P.
CONSRTM Kazusa DNA Research Institute; Cold Spring Harbor and Washington
University in St Louis Sequencing Consortium; European Union
Arabidopsis Genome Sequencing Consortium
TITLE Sequence and analysis of chromosome 5 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 823-826 (2000)
PUBMED 11130714
REFERENCE 2 (bases 1 to 2380)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 2380)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
REFERENCE 4 (bases 1 to 2380)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
This record is derived from an annotated genomic sequence
(NC_003076).
FEATURES Location/Qualifiers
source 1..2380
/organism="Arabidopsis thaliana"
/mol_type="mRNA"
/db_xref="taxon:3702"
/chromosome="5"
/ecotype="Columbia"
gene 1..2380
/locus_tag="AT5G08500"
/gene_synonym="F8L15.19"
/db_xref="Araport:AT5G08500"
/db_xref="GeneID:830749"
/db_xref="TAIR:AT5G08500"
CDS 532..2082
/locus_tag="AT5G08500"
/gene_synonym="F8L15.19"
/codon_start=1
/product="Transmembrane CLPTM1 family protein"
/protein_id="NP_001332181.1"
/db_xref="GeneID:830749"
/db_xref="Araport:AT5G08500"
/db_xref="TAIR:AT5G08500"
/translation="MWFYLSEHEKFNDFGNEGALIWHETNIPYAVWKPESTRTLSMTY
YPSEALKNNGSLYAHVFFALSGYPIDLSDPEYQPLNCFGRTHPVATYLPKRKADKKKS
LLGNPKDSDESHVEVEEVDGKDSDLKDEGPVEWVSYWKPNVTINLVDDFTRYPQHGVP
PNIYPYLLVEPSTINYYPTVFFNEFWLLRDKLILINETVSELPLNLEVSPISMTKWQL
FQQIDQSFQIHRSYGSMLDGESDELKRVFLEGNPYLLGVTMFVSMLHSVFDFLAFKND
IQFWNKNKSMEGLSAKSVVLNFICQFIIFLYLLDNDTSWMILASSGVGVCIEFWKIGK
AMRIEVDRSGMIPRLRFHDRESYASNKTKEYDDIAIKFLSYVLLLLVVGFSIYSLAYE
RHKSWYSWILSSLTSCVYMFGFIMMCPQLFINYKLKSVAHLPWRQMTYKFLNTIIDDL
FAFVIKMPMLHRLSVFRDDVIFLIYLYQRWVYPVDKTRVNEFGFGGEDESVDTKKISD
QEDDKKTN"
ORIGIN
1 agaagaaaaa aaacaaattc cataaatata tatatctttc gtcgactctg cttttacaca
61 tctctcacac ggtaaagtta caataatctc agcttgaatc acactgacga aggcatcttc
121 ctgcgattat ggcgtcgccg gcaggtgaaa cagcagcggt tgttgagggc ggagatgggc
181 agcagcaacg acaagctggt gggtttgggc agacaattac cggaatcata agaatcgccg
241 tcttctgtta ctttgcttct aagttctttt ctcccaaaca aaaacctgcg gatccttcca
301 agcctactca tctcatgtcc aatctatttc agaggggcga gcccatagta atcttctggt
361 taattgtgtt gattacttgc ttattcgtta atatatgcaa tttcattcgt ttctctcttc
421 ttccaaaaca aaaaaaaaaa cgtttctttt tggttcgaaa cttcgaatca gagtttttca
481 acttctgggt ggtttagggt ttttccgttt tgtgtttttg tttgtcagga tatgtggttt
541 tatctttcgg agcatgagaa attcaatgac ttcggcaatg aaggtgcgct tatttggcat
601 gagacaaaca taccttatgc tgtgtggaaa ccagagagca ctaggacctt gtcaatgacg
661 tactatcctt ccgaggcact gaagaataat ggaagtctgt atgctcatgt cttctttgct
721 ctatctggtt atcctataga tcttagtgat cctgaatacc agcctctcaa ctgctttggc
781 aggactcacc ctgttgcaac ttacttacca aagcgaaaag cagataagaa gaagagtctg
841 ttgggaaatc ccaaagactc tgatgaatcc catgtggaag ttgaggaggt tgatggtaag
901 gactcggatc tcaaggatga gggccctgtg gaatgggtat cctactggaa accaaatgtc
961 acaattaacc tagtcgatga ctttactcgc tatccacagc atggtgtacc accaaacatt
1021 tatccttact tactggtgga acctagtaca ataaactact accctacagt tttcttcaat
1081 gagttttggt tgctaaggga caagttgatt ttaatcaatg agacggtctc agagctgcca
1141 cttaatctgg aagtaagccc cataagcatg acaaagtggc agctgtttca gcagattgat
1201 cagtctttcc agattcaccg tagctatgga agcatgcttg atggtgaatc tgacgaacta
1261 aagagggtgt ttttggaagg aaatccctat ctgttgggcg tcactatgtt tgtttcgatg
1321 cttcattctg tattcgactt ccttgcattc aaaaatgata tccagttttg gaacaagaac
1381 aaatctatgg aaggactgtc tgcgaagtct gtcgtactaa actttatctg tcagtttatc
1441 atcttcctct acctgcttga caacgacact tcatggatga tactggctag ctctggagtt
1501 ggtgtctgca tcgagttctg gaaaattggg aaagccatgc gcattgaggt tgatcgaagt
1561 gggatgattc caagattgag gttccacgac cgtgaatcct atgcaagcaa caagaccaag
1621 gagtatgacg acattgccat caaattctta tcctatgtgc tcctccttct tgttgtgggt
1681 ttctccatat attcacttgc ctatgaacgc cacaagagct ggtactcatg gatcctatct
1741 tcactaacga gctgcgtcta catgtttggt ttcataatga tgtgtcctca attgttcatc
1801 aactataagc tgaagtcagt agcacattta ccatggaggc aaatgacata taagttcctc
1861 aacacaatca tcgacgatct ctttgctttt gtcatcaaaa tgccaatgtt gcatcgcctt
1921 tctgtcttcc gagatgatgt gatattctta atatacttgt accagagatg ggtttatcct
1981 gtggacaaaa cacgtgtcaa cgagtttggt tttggaggtg aggatgagtc tgtggataca
2041 aagaagatct ctgaccaaga agatgacaag aaaacaaact aattagcttt gtgcttttgt
2101 ttttccctaa caattttgag tttttttggg tctgctttag taagttttgt taatgctact
2161 tatatccaaa agtaatttcg ttttagggta atataaaaaa aaaagtgtta aagaatatca
2221 cttagttata attttgtttt gtttatatgt aactttagtt ctcaatgttt ttctagacac
2281 tcttcttcat ctggtaccag atatagagac agatgatttg ctagataaag attttgtaga
2341 tcggcaaatg tcataattga gtaatttgtt gttttggata
//